Reference long-read isoform-aware transcriptomes of 4 human peripheral blood lymphocyte subsets is a dataset published in G3 Genes Genomes Genetics (2022). On theSindex it has a DataRank of 0.339, placing it in the top 51.4% of the data-sharing corpus. It has been cited 7 times, with 3 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 51% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The datasets met several metrics of high quality and have been deposited to the Gene Expression Omnibus database ( GSE202327 , GSE202328 , GSE202329 ) as both raw and processed files to serve as long-read reference transcriptomes for future studies of human circulating lymphocytes.”
The paper provides GEO accessions (GSE202327, GSE202328, GSE202329), which are persistent identifiers in the accepted scheme (repository accession). [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“have been deposited to the Gene Expression Omnibus database ( GSE202327 , GSE202328 , GSE202329 )”
The repository named is Gene Expression Omnibus (GEO), a proper noun listed in re3data/FAIRsharing. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The datasets met several metrics of high quality and have been deposited to the Gene Expression Omnibus database ( GSE202327 , GSE202328 , GSE202329 ) as both raw and processed files to serve as long-read reference transcriptomes for future studies of human circulating lymphocytes.”
The dataset identifiers (GSE accessions) appear only in the body text (abstract, Data Availability), not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All Sequencing data sets were deposited to the GEO. For each Iso-Seq human lymphocyte dataset, raw FLNC files were deposited in BAM format alongside processed data files (Iso-Seq only: GSE202328 , SuperSeries: GSE202329 ).”
The data availability statement points to a repository (GEO) with specific accessions (GSE202328, GSE202329), which is a repository record (Colavizza category 3). [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The processed files consist of raw gene isoform counts, annotation (GTF) files, and UCSC Genome Browser tracks.”
The dataset's content is described in running prose only (no section, table, or enumerated list), so it is a partial description. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All Sequencing data sets were deposited to the GEO.”
The text gives a route to the data (GEO) with no stated precondition (no embargo, registration, or request), indicating unconditional availability. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“All Sequencing data sets were deposited to the GEO.”
The paper describes the action of depositing to GEO but does not explicitly label the access level (e.g., 'open access'), so the access level must be inferred from the action.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
Human subject data are deposited in GEO without naming any gatekeeper (institutional committee or personal contact) for access, so no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“All Sequencing data sets were deposited to the GEO.”
The paper states that the data are deposited (available now) but does not specify how long they will persist, so only availability timing is given. [majority verdict 'partial' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“raw FLNC files were deposited in BAM format alongside processed data files (Iso-Seq only: GSE202328 , SuperSeries: GSE202329 ).”
BAM is an open, community-standard format for sequence alignment data. [majority verdict 'yes' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“with Gencode (v39) annotations”
GENCODE is a community-standard annotation resource applied to the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Fasta files were aligned to the Homo sapiens reference genome assembly (hg38) using minimap2 v2.18-r1015 ( Li 2018 ).”
The paper provides the reference genome assembly identifier (hg38), which is a standard build ID for a resource other than the study's own dataset. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper only licenses the article (CC BY 4.0) and does not state a license for the data itself.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the deposited data; the data are referred to without a snapshot identifier.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The study's own custom code is not deposited or linked; only a third-party tool URL is provided, and no locator for the study's code is given.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Research reported in this publication was supported by the Barnstable-Brown Foundation and the Commonwealth of Kentucky Research Challenge Trust Fund and in part by the National Institute of Allergy and Infectious Diseases of the National Institutes of Health under Award Number R01AI127970 and the National Institute of General Medical Sciences of the National Institutes of Health under Award Number P20GM103436.”
The paper provides award numbers (R01AI127970, P20GM103436) from named funders (NIH).
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Sequencing was performed using 1 SMRTcell 8M per pair of barcoded samples on a Sequel IIe system”
The paper names the specific instrument (Sequel IIe) and other tools/kits (e.g., STAR v2.6, minimap2 v2.18) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is named as accompanying the data, and no variable-definition table is present inside the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.312
From this paper's citation signal
Citation Network Contribution
0.0275
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 3 citers.
NIGMS NIH HHS
Grant: P20 GM103436
NIAID NIH HHS
Grant: R01 AI127970
National Institutes of Health
Grant: 2P20GM103436-19
IDeA Networks of Biomedical Research Excellence in Kentucky
National Institutes of Health
Grant: 5R01AI127970-05
Mechanisms of successful vaccine adjuvants
Barnstable-Brown Foundation
National Institutes of Health
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals