Samie R. Jaffrey

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 53 papers. Top paper: “Limits in the detection of m6A changes using MeRIP/m6A-seq”.

Limits in the detection of m6A changes using MeRIP/m6A-seq

Scientific Reports(2020)10.1038/s41598-020-63355-3

N/A

6.2DataRank · unranked

269 citations

Nandan S. Gokhale, Leandro Cerchietti, Samie R. Jaffrey, Stacy M. Horner, Christopher E. Mason +1 more

m6A RNA methylation impacts fate choices during skin morphogenesis

eLife(2020)10.7554/elife.56980

N/A

1.6DataRank · unranked

93 citations

Thomas Carroll, Irina Matos, Ji‐Dung Luo, Lisa Polak, H. Amalia Pasolli +3 more

The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold

Nature Chemical Biology(2021)10.1038/s41589-021-00931-2

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1.2DataRank · unranked

42 citations

Hamed Kooshapur, Sourav Dey, Xing Li, Nico Tjandra, Samie R. Jaffrey +2 more

BTG1 mutation yields supercompetitive B cells primed for malignant transformation

Science(2023)10.1126/science.abj7412

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1.1DataRank · unranked

41 citations

Matt Teater, Juhee Pae, Christopher R. Chin, Ling Wang, Theinmozhi Arulraj +30 more

A Unified Model for the Function of YTHDF Proteins in Regulating m6A-Modified mRNA

Cell(2020)10.1016/j.cell.2020.05.012

N/A

1.0DataRank · unranked

838 citations

Samie R. Jaffrey, Sara Zaccara

The RNA m6A Reader YTHDF2 Maintains Oncogene Expression and Is a Targetable Dependency in Glioblastoma Stem Cells

Cancer Discovery(2020)10.1158/2159-8290.cd-20-0331

N/A

0.922DataRank · unranked

466 citations

Briana C. Prager, Ryan C. Gimple, Hui Xian Poh, Yang Wang, Qiulian Wu +14 more

mTORC1 promotes cell growth via m6A-dependent mRNA degradation

Molecular Cell(2021)10.1016/j.molcel.2021.03.010

N/A

0.714DataRank · unranked

116 citations

Gina Lee, Brian F. Pickering, Cholsoon Jang, Jin H. Park, Long He +10 more

Alternative splicing of METTL3 explains apparently METTL3-independent m6A modifications in mRNA

PLoS Biology(2022)10.1371/journal.pbio.3001683

N/A

0.650DataRank · unranked

75 citations

Aashiq H. Mirza, Brian F. Pickering, Samie R. Jaffrey, Hui Xian Poh

m6A governs length-dependent enrichment of mRNAs in stress granules

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01089-2

N/A

0.609DataRank · unranked

57 citations

Brian F. Pickering, Hui Xian Poh, Sim Namkoong, Samie R. Jaffrey, Ryan J. Ries

Fluorogenic CRISPR for genomic DNA imaging

Nature Communications(2024)10.1038/s41467-024-45163-9

N/A

0.584DataRank · unranked

48 citations

Xiaoxiao Rong, Tianjin Xie, Zehao Li, Haozhi Song, Shu Jun Zhen +5 more

tRNA modifications tune m6A-dependent mRNA decay

Cell(2025)10.1016/j.cell.2025.04.013

N/A

0.553DataRank · unranked

39 citations

Puneet Sharma, Jie Wu, Tosca Birbaumer, Cristián Eggers, Shino Murakami +8 more

Naturally occurring three-way junctions can be repurposed as genetically encoded RNA-based sensors

Cell chemical biology(2021)10.1016/j.chembiol.2021.04.022

N/A

0.505DataRank · unranked

28 citations

Jiahui Wu, Sourav Dey, Jacob L. Litke, Xing Li, Hyaeyeong Kim +2 more

Imaging mRNA trafficking in living cells using fluorogenic proteins

Current Opinion in Chemical Biology(2020)10.1016/j.cbpa.2020.07.007

N/A

0.483DataRank · unranked

24 citations

Samie R. Jaffrey, Jiahui Wu

A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome

Nature Protocols(2023)10.1038/s41596-023-00857-0

N/A

0.416DataRank · unranked

15 citations

Bing Liang Alvin Chew, Yong Lai, Hongping Dong, Luang Xu, Yu Liu +8 more

Designing and Expressing Circular RNA Aptamers to Regulate Mammalian Cell Biology

Methods in molecular biology(2022)10.1007/978-1-0716-2695-5_17

N/A

0.312DataRank · unranked

7 citations

Samie R. Jaffrey, Jacob L. Litke

RNA tertiary structure and conformational dynamics revealed by BASH MaP

eLife(2024)10.7554/elife.98540

N/A

0.230DataRank · unranked

3 citations

Samie R. Jaffrey, Maxim Oleynikov

Decoding m6Am by simultaneous transcription-start mapping and methylation quantification

eLife(2024)10.7554/elife.104139

N/A

0.208DataRank · unranked

3 citations

Ben R Hawley, Luke S Nicholson, Samie R. Jaffrey, Jianheng Liu

Biomolecular condensates create phospholipid-enriched microenvironments

Nature Chemical Biology(2023)10.1038/s41589-023-01474-4

N/A

0DataRank · unranked

57 citations

Qiuying Chen, Dawson Miller, Nabeel Attarwala, Steven S. Gross, Samie R. Jaffrey +1 more

Highly efficient cellular expression of circular mRNA enables prolonged protein expression

Cell chemical biology(2023)10.1016/j.chembiol.2023.09.015

N/A

0DataRank · unranked

54 citations

Samie R. Jaffrey, Mildred J. Unti

Intricate 3D architecture of a DNA mimic of GFP

Nature(2023)10.1038/s41586-023-06229-8

N/A

0DataRank · unranked

48 citations

Michael T. Banco, Jared D. Moon, Xing Li, Samie R. Jaffrey, A.R. Ferré-D′Amaré +1 more

Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture

Nature Communications(2023)10.1038/s41467-023-38683-3

N/A

0DataRank · unranked

21 citations

Mary R. Starich, Katie A. Link, Jiahui Wu, Jay R. Knutson, Nico Tjandra +3 more

Synthetic biology tools to promote the folding and function of RNA aptamers in mammalian cells

RNA Biology(2023)10.1080/15476286.2023.2206248

N/A

0DataRank · unranked

20 citations

Samie R. Jaffrey, Qian Hou

Alphaherpesvirus-mediated remodeling of the cellular transcriptome results in depletion of m6A-containing transcripts

iScience(2023)10.1016/j.isci.2023.107310

N/A

0DataRank · unranked

13 citations

Anthony O. Olarerin-George, Ruth Verhamme, Aashiq H. Mirza, Samie R. Jaffrey, Herman W. Favoreel +1 more

SCARPET: site-specific quantification of methylated and nonmethylated adenosines reveals m6A stoichiometry

RNA(2023)10.1261/rna.079776.123

N/A

0DataRank · unranked

7 citations

Yaron Bram, Robert E. Schwartz, Samie R. Jaffrey, Aashiq H. Mirza

Gas6-Axl Signaling Induces SRF/MRTF-A Gene Transcription via MICAL2

Genes(2023)10.3390/genes14122231

N/A

0DataRank · unranked

3 citations

Samie R. Jaffrey, Mark R. Lundquist

Highly efficient cellular expression of circular mRNA enables prolonged protein expression

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.11.548538

N/A

0DataRank · unranked

1 citations

Samie R. Jaffrey, Mildred J. Unti

Understanding the redundant functions of the m6A-binding YTHDF proteins

RNA(2024)10.1261/rna.079988.124

N/A

0DataRank · unranked

27 citations

Samie R. Jaffrey, Sara Zaccara

Engineering acyclovir-induced RNA nanodevices for reversible and tunable control of aptamer function

Cell chemical biology(2024)10.1016/j.chembiol.2024.07.017

N/A

0DataRank · unranked

4 citations

Jacob L. Litke, N.F Mohamad Nasir, Qian Hou, Samie R. Jaffrey, Timo Hagen

A circular split nanoluciferase reporter for validating and screening putative internal ribosomal entry site elements

RNA(2024)10.1261/rna.080008.124

N/A

0DataRank · unranked

3 citations

Lisa Doetsch, Samie R. Jaffrey, Mildred J. Unti

RNA tertiary structure and conformational dynamics revealed by BASH MaP

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.11.589009

N/A

0DataRank · unranked

1 citations

Samie R. Jaffrey, Maxim Oleynikov

RNA tertiary structure and conformational dynamics revealed by BASH MaP

eLife(2024)10.7554/elife.98540.2

N/A

0DataRank · unranked

1 citations

Samie R. Jaffrey, Maxim Oleynikov

Dinoflagellate mRNA is pervasively modified with m1A

EMBO Reports(2024)10.1038/s44319-024-00263-x

N/A

0DataRank · unranked

0 citations

Samie R. Jaffrey, Jianheng Liu

Decoding m6Am by simultaneous transcription-start mapping and methylation quantification

eLife(2024)10.7554/elife.104139.1

N/A

0DataRank · unranked

0 citations

Ben R Hawley, Luke Nicholson, Samie R. Jaffrey, Jianheng Liu

m6A alters ribosome dynamics to initiate mRNA degradation

Cell(2025)10.1016/j.cell.2025.04.020

N/A

0DataRank · unranked

41 citations

Anthony O. Olarerin-George, Jianheng Liu, Sara Zaccara, Ben R Hawley, Samie R. Jaffrey +1 more

A portable poison exon for small-molecule control of mammalian gene expression

Nature Methods(2025)10.1038/s41592-025-02860-7

N/A

0DataRank · unranked

3 citations

Maxim Oleynikov, Xiaohan Mei, L.-Y. Dennis Dong, Timo Hagen, Samie R. Jaffrey +1 more

Sustained Epigenetic Reactivation in Fragile X Neurons with an RNA-Binding Small Molecule

Genes(2025)10.3390/genes16030278

N/A

0DataRank · unranked

2 citations

Jason G. Dumelie, Gabriele Ciceri, Wang-Yong Yang, Matthew D. Disney, Lorenz Studer +2 more

tRNA modifications are required for stress granule formation and melanoma metastasis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.20.671337

N/A

0DataRank · unranked

0 citations

Hannah J Davis, Leona Nease, Paul Zumbo, Mauro Danielli, Wyatt Tran +17 more

Caspase-8 Inhibition Prevents the Cleavage and Degradation of E3 Ligase Substrate Receptor Cereblon and Potentiates Its Biological Function

Frontiers in Cell and Developmental Biology(2020)10.3389/fcell.2020.605989

N/A

0DataRank · unranked

9 citations

Wen-Jun Yu, David Jayabalan, Rubén Niesvizky, Samie R. Jaffrey, Xiangao Huang +2 more

Metazoan tRNA introns generate stable circular RNAs in vivo

UNC Libraries(2020)10.17615/qqpn-e532

N/A

0DataRank · unranked

7 citations

A. Gregory Matera, Samie R. Jaffrey, Zhipeng Lü, John J. Noto, Casey A. Schmidt +3 more

Global profiling of stimulus-induced polyadenylation in cells using a poly(A) trap

UNC Libraries(2020)10.17615/9wzj-rx89

N/A

0DataRank · unranked

0 citations

Michael R. Cohen, Christina S. Leslie, Samie R. Jaffrey, Dušica Curanović, Christopher E. Slagle +1 more

Engineering Fluorophore Recycling in a Fluorogenic RNA Aptamer

Angewandte Chemie International Edition(2021)10.1002/anie.202108338

N/A

0DataRank · unranked

37 citations

Jiahui Wu, Samie R. Jaffrey, Xing Li

Engineering Fluorophore Recycling in a Fluorogenic RNA Aptamer

Angewandte Chemie(2021)10.1002/ange.202108338

N/A

0DataRank · unranked

9 citations

Jiahui Wu, Samie R. Jaffrey, Xing Li

Trans ligation of RNAs to generate hybrid circular RNAs using highly efficient autocatalytic transcripts

Methods(2021)10.1016/j.ymeth.2021.05.009

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0DataRank · unranked

8 citations

Samie R. Jaffrey, Jacob L. Litke

Understanding the source of METTL3-independent m 6 A in mRNA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472866

N/A

0DataRank · unranked

7 citations

Aashiq H. Mirza, Brian F. Pickering, Samie R. Jaffrey, Hui Xian Poh

Mapping of m 6 A and Its Regulatory Targets in Prostate Cancer Reveals a METTL3-low Induction of Therapy Resistance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.12.426354

N/A

0DataRank · unranked

0 citations

John Gallon, Nadine Uebersax, Philip Rubin, Kate D. Meyer, Salvatore Piscuoglio +3 more

Caspase-11 interaction with NLRP3 potentiates the noncanonical activation of the NLRP3 inflammasome

Nature Immunology(2022)10.1038/s41590-022-01192-4

N/A

0DataRank · unranked

108 citations

Baosen Jia, Zachary Hutchins, Soumit Roy, Hilary Yip, Jiahui Wu +5 more

Self-Assembly of Intracellular Multivalent RNA Complexes Using Dimeric Corn and Beetroot Aptamers

Journal of the American Chemical Society(2022)10.1021/jacs.1c13583

N/A

0DataRank · unranked

48 citations

Nina Svensen, Wenjiao Song, Hyaeyeong Kim, Sulei Zhang, Xing Li +2 more

Alphaherpesvirus US3 protein-mediated inhibition of the m6A mRNA methyltransferase complex

Cell Reports(2022)10.1016/j.celrep.2022.111107

N/A

0DataRank · unranked

31 citations

Ruth Verhamme, Aashiq H. Mirza, Anthony O. Olarerin-George, Cliff Van Waesberghe, Samie R. Jaffrey +2 more

Cbln1 regulates axon growth and guidance in multiple neural regions

PLoS Biology(2022)10.1371/journal.pbio.3001853

N/A

0DataRank · unranked

20 citations

Yuanchu She, Zhuoxuan Yang, Mengru Zhuang, Qingjun Wang, Xiaopeng Luo +5 more

Expanding the epitranscriptome: Dihydrouridine in mRNA

PLoS Biology(2022)10.1371/journal.pbio.3001720

N/A

0DataRank · unranked

4 citations

Samie R. Jaffrey, Sameer Dixit

YTHDC2 control of gametogenesis requires helicase activity but not m6A binding

Genes & Development(2022)10.1101/gad.349190.121

N/A

0DataRank · unranked

44 citations

Ben R Hawley, M Rhyan Puno, Shreya Sarathy, Christopher D. Lima, Samie R. Jaffrey +4 more

Selective detection of m 6 A derived from mRNA using the Phospho-tag m 6 A assay

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.23.493172

N/A

0DataRank · unranked

4 citations

Nabeel Attarwala, Steven S. Gross, Qiuying Chen, Samie R. Jaffrey, Aashiq H. Mirza

mRNA ageing shapes the Cap2 methylome in mammalian mRNA

Nature(2023)10.1038/s41586-022-05668-z

N/A

0DataRank · unranked

80 citations

Samie R. Jaffrey, Vladimir Despic