Patrick Cahan

Also affiliated with Johns Hopkins Medicine

MedicineBiochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.499Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Intercellular signaling dynamics from a single cell atlas of the biomaterials response

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.218537

Top 38%

0.499DataRank

Top 38%13 citations

David R. Maestas, Jin Han, James I. Andorko, Patrick Cahan, Elana J. Fertig +3 more

Papers

Driven by 30 papers — median percentile 62. Top paper: “Deconstructing transcriptional heterogeneity in pluripotent stem cells”.

Deconstructing transcriptional heterogeneity in pluripotent stem cells

Nature(2014)10.1038/nature13920

N/A

0.893DataRank · unranked

384 citations

Patrick Cahan, Alex K. Shalek, Rahul Satija, A. Jay DaleyKeyser, Hu Li +11 more

Evaluating the transcriptional fidelity of cancer models

Genome Medicine(2021)10.1186/s13073-021-00888-w

N/A

0.584DataRank · unranked

48 citations

Rachel Gleyzer, Wen-Hsin Tai, Pavithra Kumar, Qin Bian, Bradley Isaacs +6 more

Immune Checkpoint Molecule TIGIT Regulates Kidney T Cell Functions and Contributes to AKI

Journal of the American Society of Nephrology(2023)10.1681/asn.0000000000000063

N/A

0.515DataRank · unranked

30 citations

Kyungho Lee, Sepideh Gharaie, Johanna T. Kurzhagen, Philip M. Pierorazio, Lois J. Arend +4 more

Intercellular signaling dynamics from a single cell atlas of the biomaterials response

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.218537

Top 38%

0.499DataRank

Top 38%13 citations

David R. Maestas, Jin Han, James I. Andorko, Patrick Cahan, Elana J. Fertig +3 more

Organogenetic transcriptomes of the Drosophila embryo at single cell resolution

Development(2024)10.1242/dev.202097

N/A

0.396DataRank · unranked

13 citations

Dorian J Jackson, Bianca Palicha, Eric M. Kernfeld, Nathaniel Laughner, Ashleigh M Shoemaker +5 more

CrebA regulation of secretory capacity: genome-wide transcription profiling coupled with in vivo DNA binding studies

Genetics(2025)10.1093/genetics/iyaf214

N/A

0.180DataRank · unranked

2 citations

Da Peng, Santosh P Shinde, Ankita Holenarasipura, Vidya Ajay, Patrick Cahan +2 more

Gene regulation network inference using k-nearest neighbor-based mutual information estimation-Revisiting an old DREAM

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.20.473242

N/A

0DataRank · unranked

0 citations

Elijah Roberts, Patrick Cahan, Jie Xiao, Lior Shachaf

Single‐Cell Transcriptomic Census of Endothelial Changes Induced by Matrix Stiffness and the Association with Atherosclerosis

Advanced Functional Materials(2022)10.1002/adfm.202203069

N/A

0DataRank · unranked

36 citations

Yu‐Hao Cheng, Frank Charbonier, Vivek Kumar Gupta, Aaron T. Mayer, Alexandro E. Trevino +5 more

Reconstruction of dynamic regulatory networks reveals signaling-induced topology changes associated with germ layer specification

Stem Cell Reports(2022)10.1016/j.stemcr.2021.12.018

N/A

0DataRank · unranked

21 citations

Abby Spangler, Qin Bian, Jessica Y. Kasamoto, Patrick Cahan, Emily Y. Su

Engineering Skeletal Muscle Grafts with PAX7::GFP-Sorted Human Pluripotent Stem Cell-Derived Myogenic Progenitors on Fibrin Microfiber Bundles for Tissue Regeneration

Bioengineering(2022)10.3390/bioengineering9110693

N/A

0DataRank · unranked

12 citations

Jordana Gilbert‐Honick, In Young Choi, Emily K.W. Lo, Hotae Lim, Shaquielle Dias +6 more

Platform-Agnostic CellNet (PACNet) enables cross-study meta-analysis of cell fate engineering protocols

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.07.506886

N/A

0DataRank · unranked

2 citations

Jeremy J. Velazquez, Da Peng, Chulan Kwon, Mo R. Ebrahimkhani, Patrick Cahan +1 more

Sympathetic Innervation Regulates Osteocyte‐Mediated Cortical Bone Resorption during Lactation

Advanced Science(2023)10.1002/advs.202207602

N/A

0DataRank · unranked

39 citations

Ningrong Chen, Qian Cheng, Cheng Qi, Kathleen Noller, Mei Wan +5 more

Single cell and spatial transcriptomics analysis of kidney double negative T lymphocytes in normal and ischemic mouse kidneys

Scientific Reports(2023)10.1038/s41598-023-48213-2

N/A

0DataRank · unranked

15 citations

Kyungho Lee, Kathleen Noller, Emily K.W. Lo, Brendan Miller, Hyun Jun Jung +9 more

Platform-agnostic CellNet enables cross-study analysis of cell fate engineering protocols

Stem Cell Reports(2023)10.1016/j.stemcr.2023.06.008

N/A

0DataRank · unranked

13 citations

Jeremy J. Velazquez, Da Peng, Chulan Kwon, Mo R. Ebrahimkhani, Patrick Cahan +1 more

Gene regulation network inference using k-nearest neighbor-based mutual information estimation: revisiting an old DREAM

BMC Bioinformatics(2023)10.1186/s12859-022-05047-5

N/A

0DataRank · unranked

10 citations

Elijah Roberts, Patrick Cahan, Jie Xiao, Lior Shachaf

Model-X knockoffs reveal data-dependent limits on regulatory network identification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.23.541948

N/A

0DataRank · unranked

3 citations

Rebecca Keener, Patrick Cahan, Alexis Battle, Eric M. Kernfeld

Transcriptome data are insufficient to control false discoveries in regulatory network inference

Cell Systems(2024)10.1016/j.cels.2024.07.006

N/A

0DataRank · unranked

18 citations

Rebecca Keener, Patrick Cahan, Alexis Battle, Eric M. Kernfeld

OneSC: a computational platform for recapitulating cell state transitions

Bioinformatics(2024)10.1093/bioinformatics/btae703

N/A

0DataRank · unranked

1 citations

Patrick Cahan, Da Peng

Cell cycle expression heterogeneity predicts degree of differentiation

Briefings in Bioinformatics(2024)10.1093/bib/bbae536

N/A

0DataRank · unranked

1 citations

Patrick Cahan, Kathleen Noller

Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells

Scientific Data(2024)10.1038/s41597-024-03399-6

N/A

0DataRank · unranked

20 citations

Kristen Fread, Sarah M. Goggin, Eli R. Zunder, Patrick Cahan, Emily Y. Su

Polyamine Depletion by D, L-alpha-difluoromethylornithine Inhibits Ewing Sarcoma Metastasis by Inducing Ferroptosis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.14.599064

N/A

0DataRank · unranked

3 citations

Kyle W. Jackson, Masanori Hayashi, Jinghang Zhang, Da Peng, Yuqi Tan +7 more

Cell cycle expression heterogeneity predicts degree of differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.19.604184

N/A

0DataRank · unranked

0 citations

Patrick Cahan, Kathleen Noller

Polyamine Depletion by D,L-α-Difluoromethylornithine Inhibits Ewing Sarcoma Metastasis by Inducing Ferroptosis

Clinical Cancer Research(2025)10.1158/1078-0432.ccr-24-1778

N/A

0DataRank · unranked

7 citations

Kyle W. Jackson, Masanori Hayashi, Jinghang Zhang, Da Peng, Yuqi Tan +7 more

Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells

Nature(2015)10.1038/nature14150

N/A

0DataRank · unranked

0 citations

Patrick Cahan, Alex K. Shalek, Rahul Satija, A. Jay DaleyKeyser, Hu Li +12 more

VIDEO - Visual Integration of Drosophila Enhancer Organization: A tool for integrating and visualizing chromatin accessibility, in vivo transcription factor binding and motif occurrence in tissue-specific differentially expressed genes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.27.684897

N/A

0DataRank · unranked

0 citations

Nathaniel Laughner, Patrick Cahan, Deborah J. Andrew, Vidya Ajay

Gene Regulatory Network Analysis and Engineering Directs Development and Vascularization of Multilineage Human Liver Organoids

Cell Systems(2020)10.1016/j.cels.2020.11.002

N/A

0DataRank · unranked

104 citations

Ryan LeGraw, Farzaneh Moghadam, Yuqi Tan, Jacquelyn Kilbourne, Joseph C. Maggiore +9 more

A single cell transcriptional atlas of early synovial joint development

Development(2020)10.1242/dev.185777

N/A

0DataRank · unranked

46 citations

Yu‐Hao Cheng, Jordan Wilson, Emily Y. Su, Dong Won Kim, Hong Wang +4 more

Evaluating the transcriptional fidelity of cancer models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.27.012757

N/A

0DataRank · unranked

5 citations

Rachel Gleyzer, Wen-Hsin Tai, Pavithra Kumar, Qin Bian, Bradley Issacs +6 more

Computational Stem Cell Biology: Open Questions and Guiding Principles

Cell stem cell(2021)10.1016/j.stem.2020.12.012

N/A

0DataRank · unranked

39 citations

Davide Cacchiarelli, Sara‐Jane Dunn, Martin Hemberg, Susana M. Chuva de Sousa Lopes, Samantha A Morris +4 more

Signaling and transcriptional networks governing late synovial joint development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.25.457383

N/A

0DataRank · unranked

0 citations

Yu‐Hao Cheng, Emily Y. Su, Yuqi Tan, Dong Won Kim, Hong Wang +4 more

Patrick Cahan

Indexed papers

Top data-sharing exemplar

Papers