🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Cemal Erdem

Umeå University

ORCID: 0000-0003-3663-3646
Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling”.

A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling

Nature Communications(2022)10.1038/s41467-022-31138-1
N/A
0.658DataRank · unranked
27 citations

Arnab Mutsuddy, Ethan M. Bensman, William B. Dodd, Michael Saint-Antoine, Mehdi Bouhaddou +6 more

A Scalable, Open-Source Implementation of a Large-Scale Mechanistic Model for Single Cell Proliferation and Death Signaling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.09.373407
N/A
0DataRank · unranked
0 citations

Arnab Mutsuddy, Ethan M. Bensman, William B. Dodd, Michael Saint-Antoine, Mehdi Bouhaddou +6 more

Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009125
N/A
0DataRank · unranked
3 citations

Adrian V. Lee, D. Lansing Taylor, Timothy R. Lezon, Cemal Erdem

Mesowestern Blot: Simultaneous Analysis of Hundreds of Sub-Microliter Lysates

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.07.467614
N/A
0DataRank · unranked
0 citations

Jonah R. Huggins, Baylee C. Westbury, William R. Interiano, S. Ashley Phillips, Cemal Erdem +5 more

Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates

ACS Omega(2022)10.1021/acsomega.2c02201
N/A
0DataRank · unranked
3 citations

Jonah R. Huggins, Deepraj Sarmah, Baylee C. Westbury, William R. Interiano, Micah C. Jordan +7 more

Multi-Omics Binary Integration via Lasso Ensembles (MOBILE) for identification of context-specific networks and new regulatory mechanisms

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.24.501297
N/A
0DataRank · unranked
2 citations

Sean M. Gross, Laura M. Heiser, Marc R. Birtwistle, Cemal Erdem

Expanding large-scale mechanistic models with machine learned associations and big datasets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517431
N/A
0DataRank · unranked
0 citations

Marc R. Birtwistle, Cemal Erdem

MEMMAL: A tool for expanding large-scale mechanistic models with machine learned associations and big datasets

Frontiers in Systems Biology(2023)10.3389/fsysb.2023.1099413
N/A
0DataRank · unranked
10 citations

Marc R. Birtwistle, Cemal Erdem

MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms

Nature Communications(2023)10.1038/s41467-023-39729-2
N/A
0DataRank · unranked
5 citations

Sean M. Gross, Laura M. Heiser, Marc R. Birtwistle, Cemal Erdem

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format

Bioinformatics Advances(2023)10.1093/bioadv/vbad039
N/A
0DataRank · unranked
2 citations

Cemal Erdem, Jonah R. Huggins, Misha Salim, Daniel Cook, Nicole Hobbs +3 more

Mechanistic modeling of cell viability assays with in silico lineage tracing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.23.609433
N/A
0DataRank · unranked
0 citations

Jonah R. Huggins, Aurore K. Amrit, Cemal Erdem, Jon C. Calhoun, Marc R. Birtwistle +1 more

Computational response modeling reveals context dependent Akt activity in luminal breast cancer cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.22.349647
N/A
0DataRank · unranked
1 citations

Adrian V. Lee, D. Lansing Taylor, Timothy R. Lezon, Cemal Erdem

Mechanistic modeling of cell viability assays with in silico lineage tracing

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013156
N/A
0DataRank · unranked
0 citations

Jonah R. Huggins, Aurore K. Amrit, Atalanta Manuela Harley-Gasaway, Cemal Erdem, Evan T. Jones +4 more