Pavel Skums

Biochemistry, Genetics and Molecular BiologyMedicineMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 29 papers. Top paper: “Unlocking capacities of genomics for the COVID-19 response and future pandemics”.

Unlocking capacities of genomics for the COVID-19 response and future pandemics

Nature Methods(2022)10.1038/s41592-022-01444-z

N/A

2.0DataRank · unranked

67 citations

Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan +30 more

Benchmarking of computational error-correction methods for next-generation sequencing data

Genome biology(2020)10.1186/s13059-020-01988-3

N/A

1.9DataRank · unranked

59 citations

Jaqueline Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang +21 more

Eleven grand challenges in single-cell data science

Genome Biology(2020)10.1186/s13059-020-1926-6

N/A

1.1DataRank · unranked

1396 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +49 more

Excess mortality in Belarus during the COVID-19 pandemic as the case study of a country with limited non-pharmaceutical interventions and limited reporting

Scientific Reports(2022)10.1038/s41598-022-09345-z

N/A

0.561DataRank · unranked

41 citations

Aleksandr Shishkin, Thomas A. Weppelmann, Alexander Perez Tchernov, Pavel Skums, Yuriy Gankin +1 more

Transmission dynamics and forecasts of the COVID-19 pandemic in Mexico, March-December 2020

PLoS ONE(2021)10.1371/journal.pone.0254826

N/A

0.464DataRank · unranked

21 citations

Juan M. Banda, Pavel Skums, Sushma Dahal, Carlos Castillo-Garsow, Baltazar Espinoza +11 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885v3

N/A

0.449DataRank · unranked

7 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

Investigating the first stage of the COVID-19 pandemic in Ukraine using epidemiological and genomic data

Infection Genetics and Evolution(2021)10.1016/j.meegid.2021.105087

N/A

0.425DataRank · unranked

16 citations

Alina Nemira, Vladimir Koniukhovskii, Gerardo Chowell, Thomas A. Weppelmann, Pavel Skums +2 more

Technology dictates algorithms: recent developments in read alignment

Genome biology(2021)10.1186/s13059-021-02443-7

N/A

0.358DataRank · unranked

9 citations

Jeremy Rotman, Dhrithi Deshpande, Kodi Taraszka, Huwenbo Shi, Pelin Icer Baykal +12 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v2

N/A

0.330DataRank · unranked

5 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

Inference of mutability landscapes of tumors from single cell sequencing data

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008454

N/A

0.269DataRank · unranked

5 citations

Alex Zelikovsky, Sagi Snir, Pavel Skums, Viachaslau Tsyvina

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885

N/A

0.228DataRank · unranked

2 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v1

N/A

0.193DataRank · unranked

2 citations

Johannes Köster, Ewa Szcureck, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos +50 more

An investigation of spatial-temporal patterns and predictions of the coronavirus 2019 pandemic in Colombia, 2020–2021

PLoS neglected tropical diseases(2022)10.1371/journal.pntd.0010228

N/A

0DataRank · unranked

16 citations

Tsira Chakhaia, Sushma Dahal, Alexander C. Ewing, Xinyi Hua, Sylvia K. Ofori +14 more

SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework

Cell Systems(2022)10.1016/j.cels.2022.07.005

N/A

0DataRank · unranked

11 citations

Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer Baykal, Alina Nemira, Sumathi Ramachandran +2 more

Primary case inference in viral outbreaks through analysis of intra-host variant population

BMC Bioinformatics(2022)10.1186/s12859-022-04585-2

N/A

0DataRank · unranked

1 citations

David S. Campo, Zoya Dimitrova, Pavel Skums, Yury Khudyakov, J. Walker Gussler

SOPHIE: viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.05.490757

N/A

0DataRank · unranked

1 citations

Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer Baykal, Alina Nemira, Sumathi Ramachandran +2 more

Antigenic cooperation in viral populations: Transformation of functions of intra-host viral variants

Journal of Theoretical Biology(2023)10.1016/j.jtbi.2023.111719

N/A

0DataRank · unranked

1 citations

Athulya Ram, Pavel Skums, Leonid Bunimovich

Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks

Nature Communications(2024)10.1038/s41467-024-47304-6

N/A

0DataRank · unranked

10 citations

Alex Zelikovsky, Serghei Mangul, Gerardo Chowell, Pavel Skums, Fatemeh Mohebbi

Epidemiological data analysis of viral quasispecies in the next-generation sequencing era

Briefings in Bioinformatics(2020)10.1093/bib/bbaa101

N/A

0DataRank · unranked

71 citations

Lauren S. Hughes, Pavel Skums, Alex Zelikovsky, Sergey Knyazev

Graph fractal dimension and the structure of fractal networks

Journal of Complex Networks(2020)10.1093/comnet/cnaa037

N/A

0DataRank · unranked

21 citations

Leonid Bunimovich, Pavel Skums

Using earth mover’s distance for viral outbreak investigations

BMC Genomics(2020)10.1186/s12864-020-06982-4

N/A

0DataRank · unranked

15 citations

Sergey Knyazev, Fredrik Vannberg, Leonid Bunimovich, Pavel Skums, Alex Zelikovsky +1 more

Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections

Virus Evolution(2020)10.1093/ve/veaa103

N/A

0DataRank · unranked

15 citations

James Lara, Yury Khudyakov, Alex Zelikovsky, Pavel Skums, Pelin Icer Baykal

Analysis of heterogeneous genomic samples using image normalization and machine learning

BMC Genomics(2020)10.1186/s12864-020-6661-6

N/A

0DataRank · unranked

5 citations

Pelin Icer Baykal, Alex Zelikovsky, Pavel Skums, Yi Pan, Sunitha Basodi

Quantitative differences between intra-host HCV populations from persons with recently established and persistent infections

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.17.157792

N/A

0DataRank · unranked

1 citations

James Lara, Alex Zelikovsky, Yury Khudyakov, Pavel Skums, Pelin Icer Baykal

Primary case inference in viral outbreaks through analysis of intra-host variant population

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.18.303131

N/A

0DataRank · unranked

0 citations

David S. Campo, Zoya Dimitrova, Pavel Skums, Yury Khudyakov, J. Walker Gussler

Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction

Nucleic Acids Research(2021)10.1093/nar/gkab576

N/A

0DataRank · unranked

78 citations

Viachaslau Tsyvina, Anupama Shankar, Andrew Melnyk, Alexander Artyomenko, Tatiana Malygina +7 more

SARS-CoV-2 transmission dynamics in Belarus in 2020 revealed by genomic and incidence data analysis

Communications Medicine(2021)10.1038/s43856-021-00031-1

N/A

0DataRank · unranked

12 citations

Ayotomiwa Ezekiel Adeniyi, Е. Л. Гасич, Kirill Y. Bulda, Л. Н. Валентович, Anatoly G. Krasko +4 more

SARS-CoV-2 transmission dynamics in Belarus revealed by genomic and incidence data analysis

medRxiv(2021)10.1101/2021.04.13.21255404

N/A

0DataRank · unranked

44 citations

Ayotomiwa Ezekiel Adeniyi, Е. Л. Гасич, Kirill Y. Bulda, Л. Н. Валентович, Anatoly G. Krasko +4 more

An investigation of spatial-temporal patterns and predictions of the COVID-19 pandemic in Colombia, 2020-2021

medRxiv(2021)10.1101/2021.07.28.21261212

N/A

0DataRank · unranked

1 citations

Tsira Chakhaia, Sushma Dahal, Alexander C. Ewing, Xinyi Hua, Sylvia K. Ofori +14 more