Michael Nute

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Current progress and open challenges for applying deep learning across the biosciences”.

Current progress and open challenges for applying deep learning across the biosciences

Nature Communications(2022)10.1038/s41467-022-29268-7

N/A

0.894DataRank · unranked

387 citations

Amirali Aghazadeh, Michael Nute, Dinler A. Antunes, Advait Balaji, Richard G. Baraniuk +13 more

Multiple genome alignment in the telomere-to-telomere assembly era

Genome biology(2022)10.1186/s13059-022-02735-6

N/A

0.596DataRank · unranked

52 citations

Advait Balaji, Fritz J. Sedlazeck, Michael Nute, Todd J. Treangen, Bryce Kille

KOMB: K-core based de novo characterization of copy number variation in microbiomes

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.06.019

N/A

0.360DataRank · unranked

10 citations

Nicolae Sapoval, Charlie Seto, R. A. Leo Elworth, Yilei Fu, Michael Nute +4 more

Sixth Annual BCM Hackathon on Structural Variation and Pangenomics

F1000Research(2025)10.12688/f1000research.170665.1

N/A

0.104DataRank · unranked

1 citations

Bishnu Adhikar, Shaghayegh Beheshti, Sarah Fross, Jędrzej Kubica, Jen‐Yu Wang +49 more

SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens

(2023)10.1145/3584371.3612960

N/A

0DataRank · unranked

2 citations

Yunxi Liu, Michael Nute, Bingbing Hu, Anthony D. Kappell, Danielle S. LeSassier +4 more

Parsnp 2.0: scalable core-genome alignment for massive microbial datasets

Bioinformatics(2024)10.1093/bioinformatics/btae311

N/A

0DataRank · unranked

78 citations

Michael Nute, Victor Huang, Eddie Kim, Adam M. Phillippy, Todd J. Treangen +1 more

Microbial Community Profiling Protocol with Full‐length 16S rRNA Sequences and Emu

Current Protocols(2024)10.1002/cpz1.978

N/A

0DataRank · unranked

12 citations

Sirena Soriano, Michael Nute, Sonia Villapol, Alexander T Dilthey, Todd J. Treangen +1 more

Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.30.577458

N/A

0DataRank · unranked

16 citations

Michael Nute, Victor Huang, Eddie Kim, Adam M. Phillippy, Todd J. Treangen +1 more

KOMB: Graph-Based Characterization of Genome Dynamics in Microbial Communities

(2020)10.1101/2020.05.21.109587

N/A

0DataRank · unranked

0 citations

Nicolae Sapoval, Charlie Seto, R. A. Leo Elworth, Michael Nute, Tor Savidge +3 more

Strainify: Strain-Level Microbiome Profiling for Low-Coverage Short-Read Metagenomic Datasets

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.10.681738

N/A

0DataRank · unranked

1 citations

Bryce Kille, Ellen E. Vaughan, Justin R. Clark, Anthony W. Maresso, Michael Nute +2 more

Emu: Species-Level Microbial Community Profiling for Full-Length Nanopore 16S Reads

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.02.442339

N/A

0DataRank · unranked

16 citations

Qi Wang, Michael Nute, Alona Tyshaieva, Elizabeth Reeves, Sirena Soriano +9 more

Bakdrive: Identifying the Minimum Set of Bacterial Driver Species across Multiple Microbial Communities

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.24.461746

N/A

0DataRank · unranked

2 citations

Michael Nute, Todd J. Treangen, Qi Wang

Bakdrive: identifying a minimum set of bacterial species driving interactions across multiple microbial communities

Bioinformatics(2023)10.1093/bioinformatics/btad236

N/A

0DataRank · unranked

6 citations

Michael Nute, Todd J. Treangen, Qi Wang