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KOMB: K-core based de novo characterization of copy number variation in microbiomes

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.06.019Source: DataRank Database

KOMB: K-core based de novo characterization of copy number variation in microbiomes is a research paper published in Computational and Structural Biotechnology Journal (2022). On theSindex it has a DataRank of 0.360. It has been cited 10 times.

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0.360DataRank · unranked

Scored on demand from live citation data

Open Access10 citations

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Enrichment:Funding (13 grants)OA: goldTopics (28)IDs (PubMed, PMC)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.360

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

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Authors (9)

Nicolae Sapoval ORCID,Charlie Seto,R. A. Leo Elworth ORCID,Yilei Fu ORCID,Michael Nute ORCID

Live enrichment

PubMed:35832621 PMC:PMC9249589

National Science Foundation

Grant: EF-2126387

National Library of Medicine

Grant: T15LM007093

Army Research Office

Grant: P01-AI152999

Army Research Office

Grant: U01-AI24290

NIAID NIH HHS

Grant: U01 AI124290

National Science Foundation

Grant: 2126387

MIM: Elucidating the Rules of Cooperation and Resiliency in Microbial Communities through Stochastic Graph Grammars

National Institutes of Health

Grant: 5P01AI152999-02

Dynamics of Colonization and Infection by Multidrug-resistant Pathogens in Immunocompromised and Critically Ill Patients (DYNAMITE)

National Institutes of Health

Grant: 5T15LM007093-15

Training Program in Computational Biology and Medicine

National Institutes of Health

Intelligence Advanced Research Projects Activity

Office of the Director of National Intelligence

Division of Intramural Research, National Institute of Allergy and Infectious Diseases

Rice University

goldLicense: cc-by-nc-nd

publisherhttps://doi.org/10.1016/j.csbj.2022.06.019

publisherhttps://api.elsevier.com/content/article/PII:S2001037022002331?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2001037022002331?httpAccept=text/plain

publisherhttps://spj.science.org/doi/pdf/10.1016/j.csbj.2022.06.019

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/9249589

Fields of Study

0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

RepeatsmetagenomeCopy Number Variation (Cnv)Functional CharacterizationGraph-based AnalysisCnv, Copy Number VariationGo, Gene OntologyRoc, Receiver Operating CurveCdi, Clostridium Difficile InfectionDe Bruijn GraphK-core DecompositionSra, Sequence Read ArchiveSam, Sequence Alignment MapTpr, True Positive RateDbg, De Bruijn GraphsEna, European Nucleotide ArchiveFmt, Fecal Matter TransplantationGpl, (Gnu) General Public LicenseSvs, Structural VariantsMags, Metagenome Assembled GenomesFpr, False Positive RateUnitigsTP248.13-248.65BiotechnologyResearch Article