Caleb A. Lareau

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.4Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A microRNA expression and regulatory element activity atlas of the mouse immune system

Nature Immunology(2021)10.1038/s41590-021-00944-y

Top 15%

1.4DataRank

Top 15%38 citations

Aleksandra Wroblewska, Maxime Dhainaut, Hideyuki Yoshida, Jonathan M. Shaffer, Anela Bektesevic +91 more

Papers

Driven by 64 papers — median percentile 85. Top paper: “Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations”.

Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations

Cell(2020)10.1016/j.cell.2020.06.045

N/A

8.3DataRank · unranked

739 citations

Laura M. Raffield, Abdou Mousas, Saori Sakaue, Jennifer E. Huffman, Arden Moscati +95 more

The neutrotime transcriptional signature defines a single continuum of neutrophils across biological compartments

Nature Communications(2021)10.1038/s41467-021-22973-9

N/A

7.1DataRank · unranked

347 citations

Felix A. Radtke, Pierre Cunin, Giuseppina Stifano, Anaïs Levescot, Brinda Vijaykumar +85 more

A RORγt+ cell instructs gut microbiota-specific Treg cell differentiation

Nature(2022)10.1038/s41586-022-05089-y

N/A

5.9DataRank · unranked

258 citations

Tariq Ahmad Najar, Kailin R. Mesa, Allyssa Grayson, Lina Kroehling, Yuhan Hao +18 more

Chromatin potential identified by shared single cell profiling of RNA and chromatin

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.17.156943

N/A

4.7DataRank · unranked

125 citations

Bing Zhang, Zachary Chiang, Yan Hu, Jiarui Ding, Alison Brack +9 more

Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells

Nature(2020)10.1038/s41586-020-2786-7

N/A

4.1DataRank · unranked

151 citations

Satish K. Nandakumar, Xiaotian Liao, Alexander G. Bick, Juha Karjalainen, Marcin Tabaka +79 more

Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis

Cell Reports(2019)10.1016/j.celrep.2019.05.046

N/A

4.1DataRank · unranked

178 citations

Caleb A. Lareau, Erik L. Bao, Satish K. Nandakumar, Christoph Muus, Jacob C. Ulirsch +8 more

STAG2 loss rewires oncogenic and developmental programs to promote metastasis in Ewing sarcoma

Cancer Cell(2021)10.1016/j.ccell.2021.05.007

N/A

2.7DataRank · unranked

127 citations

Gabriela Alexe, Bo Kyung A. Seong, Diana Lu, Elizabeth Hwang, Denes Hnisz +23 more

Control of human hemoglobin switching by LIN28B-mediated regulation of BCL11A translation

Nature Genetics(2020)10.1038/s41588-019-0568-7

N/A

2.6DataRank · unranked

107 citations

Mathias Munschauer, Caleb A. Lareau, Kara E. Montbleau, Jacob C. Ulirsch, Christina R. Hartigan +16 more

Purifying Selection against Pathogenic Mitochondrial DNA in Human T Cells

New England Journal of Medicine(2020)10.1056/nejmoa2001265

N/A

2.6DataRank · unranked

100 citations

Caleb A. Lareau, Leif S. Ludwig, Amel Karaa, Vijay G. Sankaran, Aviv Regev +2 more

Inference and effects of barcode multiplets in droplet-based single-cell assays

Nature Communications(2020)10.1038/s41467-020-14667-5

N/A

2.1DataRank · unranked

76 citations

Sai Ma, Fabiana M. Duarte, Jason D. Buenrostro, Caleb A. Lareau

Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features

Nature Communications(2020)10.1038/s41467-020-15022-4

N/A

2.0DataRank · unranked

81 citations

Carl G. de Boer, Charles P. Fulco, Caleb A. Lareau, Masahiro Kanai, Jacob C. Ulirsch +12 more

Single-cell profiling of proteins and chromatin accessibility using PHAGE-ATAC

Nature Biotechnology(2021)10.1038/s41587-021-01065-5

N/A

2.0DataRank · unranked

69 citations

Caleb A. Lareau, Leif S. Ludwig, Gökçen Eraslan, Feimei Liu, Aaron M. Ring +3 more

Latent human herpesvirus 6 is reactivated in CAR T cells

Nature(2023)10.1038/s41586-023-06704-2

N/A

1.6DataRank · unranked

53 citations

Yajie Yin, Katie Maurer, Katalin Sandor, Bence Dániel, Garima Yagnik +35 more

BAF Complex Maintains Glioma Stem Cells in Pediatric H3K27M Glioma

Cancer Discovery(2022)10.1158/2159-8290.cd-21-1491

N/A

1.6DataRank · unranked

63 citations

Joana G. Marques, Tingjian Wang, Maria Trissal, Ilon Liu, Li Jiang +50 more

Longitudinal Single-Cell Dynamics of Chromatin Accessibility and Mitochondrial Mutations in Chronic Lymphocytic Leukemia Mirror Disease History

Cancer Discovery(2021)10.1158/2159-8290.cd-21-0276

N/A

1.5DataRank · unranked

64 citations

Satyen H. Gohil, Caleb A. Lareau, Leif S. Ludwig, Erin M. Parry, Teddy Huang +15 more

Mitochondrial single-cell ATAC-seq for high-throughput multi-omic detection of mitochondrial genotypes and chromatin accessibility

Nature Protocols(2023)10.1038/s41596-022-00795-3

N/A

1.5DataRank · unranked

73 citations

Vincent Liu, Christoph Muus, Samantha D. Praktiknjo, Lena Nitsch, Pauline Kautz +9 more

A microRNA expression and regulatory element activity atlas of the mouse immune system

Nature Immunology(2021)10.1038/s41590-021-00944-y

Top 15%

1.4DataRank

Top 15%38 citations

Aleksandra Wroblewska, Maxime Dhainaut, Hideyuki Yoshida, Jonathan M. Shaffer, Anela Bektesevic +91 more

Single-cell multi-omics of mitochondrial DNA disorders reveals dynamics of purifying selection across human immune cells

Nature Genetics(2023)10.1038/s41588-023-01433-8

N/A

1.3DataRank · unranked

53 citations

Sonia M. Dubois, Frank A. Buquicchio, Yu-Hsin Hsieh, Kopal Garg, Pauline Kautz +25 more

JAK inhibition in a patient with a STAT1 gain-of-function variant reveals STAT1 dysregulation as a common feature of aplastic anemia

Med(2022)10.1016/j.medj.2021.12.003

N/A

1.1DataRank · unranked

24 citations

Joshua M. Peters, Travis Hughes, Caleb A. Lareau, Leif S. Ludwig, Lucas R. Massoth +12 more

Single-cell chromatin state analysis with Signac

Nature Methods(2021)10.1038/s41592-021-01282-5

N/A

1.1DataRank · unranked

1887 citations

Avi Srivastava, Shaista Madad, Caleb A. Lareau, Rahul Satija, Tim Stuart

Functional Inference of Gene Regulation using Single-Cell Multi-Omics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.453784

N/A

1.1DataRank · unranked

21 citations

Fabiana M. Duarte, Yan Hu, Sai Ma, Jennifer Chew, Caleb A. Lareau +6 more

Congenital anemia reveals distinct targeting mechanisms for master transcription factor GATA1

Blood(2022)10.1182/blood.2021013753

N/A

1.1DataRank · unranked

30 citations

Caleb A. Lareau, Erik L. Bao, Nan Liu, Taiju Utsugisawa, Alex M. Tseng +27 more

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

Cell(2020)10.1016/j.cell.2020.09.056

N/A

1.1DataRank · unranked

1182 citations

Bing Zhang, Lindsay M. LaFave, Andrew S. Earl, Zachary Chiang, Yan Hu +11 more

The Polygenic and Monogenic Basis of Blood Traits and Diseases

Cell(2020)10.1016/j.cell.2020.08.008

N/A

0.988DataRank · unranked

722 citations

Erik L. Bao, Parsa Akbari, Caleb A. Lareau, Abdou Mousas, Tao Jiang +95 more

Convergent epigenetic evolution drives relapse in acute myeloid leukemia

eLife(2024)10.7554/elife.93019

N/A

0.979DataRank · unranked

39 citations

Armon Azizi, Thomas Koehnke, Caleb A. Lareau, Asiri Ediriwickrema, M. Ryan Corces +3 more

Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

Nature Biotechnology(2021)10.1038/s41587-021-00927-2

N/A

0.944DataRank · unranked

541 citations

Caleb A. Lareau, Kelvin Y. Chen, Andre L. Zorzetto-Fernandes, Yuhan Hao, Yusuke Takeshima +16 more

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Nature Biotechnology(2020)10.1038/s41587-020-0645-6

N/A

0.860DataRank · unranked

307 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Functional dissection of complex and molecular trait variants at single nucleotide resolution

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.05.592437

N/A

0.821DataRank · unranked

31 citations

Rodrigo Castro, Hannah B. Dewey, Susan Kales, Thanh Thanh L. Nguyen, Masahiro Kanai +19 more

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Cancer Cell(2020)10.1016/j.ccell.2020.06.006

N/A

0.820DataRank · unranked

236 citations

Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Caleb A. Lareau +13 more

Multimodal single-cell chromatin analysis with Signac

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.09.373613

N/A

0.766DataRank · unranked

164 citations

Avi Srivastava, Caleb A. Lareau, Rahul Satija, Tim Stuart

Engineering mtDNA deletions by reconstituting end joining in human mitochondria

Cell(2025)10.1016/j.cell.2025.02.009

N/A

0.641DataRank · unranked

28 citations

Max Land, Tamar Kavlashvili, Ruobing Cui, Min‐Soo Kim, Emily DeBitetto +16 more

Distinct epigenomic landscapes underlie tissue-specific memory T cell differentiation

Immunity(2024)10.1016/j.immuni.2024.06.014

N/A

0.619DataRank · unranked

61 citations

Raíssa Fonseca, Patrick Yan, Fangyi Wang, Maximilien Evrard, Andreas Obers +15 more

Clonal tracing with somatic epimutations reveals dynamics of blood ageing

Nature(2025)10.1038/s41586-025-09041-8

N/A

0.604DataRank · unranked

55 citations

Indranil Singh, Martina Maria Braun, Chelsea Szu-Tu, Pedro Sanchez Sanchez, Dominik Lindenhofer +20 more

SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9

Cell(2023)10.1016/j.cell.2023.09.002

N/A

0.593DataRank · unranked

51 citations

Sabina Ganskih, Yuanjie Wei, Alexander Gabel, Sebastian Zielinski, Hasmik Keshishian +26 more

Single Cell Transcriptomics Implicate Novel Monocyte and T Cell Immune Dysregulation in Sarcoidosis

Frontiers in Immunology(2020)10.3389/fimmu.2020.567342

N/A

0.581DataRank · unranked

47 citations

Richard Pelikan, Astrid Rasmussen, Caleb A. Lareau, Kathryn A. Savoy, Umesh S. Deshmukh +6 more

Single-cell multimodal profiling of proteins and chromatin accessibility using PHAGE-ATAC

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.01.322420

N/A

0.564DataRank · unranked

11 citations

Caleb A. Lareau, Gökçen Eraslan, Leif S. Ludwig, Prisca Liberali, Evgenij Fiskin

Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.563503

N/A

0.564DataRank · unranked

11 citations

Gökçen Eraslan, Maria Beatrice Alora, Juan Manuel Leyva-Castillo, Sean Kim, Heather Choe +24 more

Transcript-specific enrichment enables profiling of rare cell states via single-cell RNA sequencing

Nature Genetics(2025)10.1038/s41588-024-02036-7

N/A

0.494DataRank · unranked

26 citations

Robert R. Stickels, Meril T. Takizawa, Benan N. Nalbant, Yu-Hsin Hsieh, Sidney Hwang +10 more

Population-scale sequencing resolves determinants of persistent EBV DNA

Nature(2026)10.1038/s41586-025-10020-2

N/A

0.411DataRank · unranked

11 citations

Erin M. Cumming, Oliver S. Burren, Meghana S. Pagadala, Jacob C. Gutierrez, Thahmina A. Ali +18 more

Dynamics of Immune Reconstitution and Impact on Outcomes across CAR-T Cell Products in Large B-cell Lymphoma

Blood Cancer Discovery(2024)10.1158/2643-3230.bcd-24-0163

N/A

0.396DataRank · unranked

13 citations

Susan DeWolf, Teng Fei, Sandeep Raj, Gunjan L. Shah, Caleb A. Lareau +18 more

Tracking Rare Single Donor and Recipient Immune and Leukemia Cells after Allogeneic Hematopoietic Cell Transplantation Using Mitochondrial DNA Mutations

Blood Cancer Discovery(2024)10.1158/2643-3230.bcd-23-0138

N/A

0.345DataRank · unranked

9 citations

Nicoletta Cieri, Katie Maurer, Marwan Kwok, Haoxiang Lyu, Wesley S. Lu +16 more

Engineering T cells with a membrane-tethered version of SLP-76 overcomes antigen-low resistance to CAR T cell therapy

Nature Cancer(2025)10.1038/s43018-025-01056-4

N/A

0.292DataRank · unranked

6 citations

Aidan M. Tousley, Hoyin Chu, Marco Herrera‐Barrera, Antigoni Manousopoulou, Won‐Ju Kim +15 more

Regulation of immune signal integration and memory by inflammation-induced chromosome conformation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582872

N/A

0.269DataRank · unranked

5 citations

Andy Y. Chen, Katalin Sandor, Wenxi Zhang, Zhuang Miao, Caleb A. Lareau +4 more

Codon affinity in mitochondrial DNA shapes evolutionary and somatic fitness

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.23.537997

N/A

0.241DataRank · unranked

4 citations

Yajie Yin, Jacob C. Gutierrez, Ryan S. Dhindsa, Anne-Sophie Gribling-Burrer, Yu-Hsin Hsieh +25 more

Cell type–specific purifying selection of synonymous mitochondrial DNA variation

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2505704122

N/A

0.241DataRank · unranked

4 citations

Patrick Maschmeyer, Yajie Yin, Jacob C. Gutierrez, Ryan S. Dhindsa, Anne-Sophie Gribling-Burrer +25 more

Single-cell multi-omics reveals dynamics of purifying selection of pathogenic mitochondrial DNA across human immune cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.20.517242

N/A

0.233DataRank · unranked

3 citations

Sonia M. Dubois, Frank A. Buquicchio, Yu-Hsin Hsieh, Kopal Garg, Pauline Kautz +24 more

Transcript-specific enrichment enables profiling rare cell states via scRNA-seq

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.27.587039

N/A

0.228DataRank · unranked

2 citations

Robert R. Stickels, Meril Takizawa, Benan N. Nalbant, Yu-Hsin Hsieh, Sidney Hwang +9 more

Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/790626

N/A

0.188DataRank · unranked

2 citations

Satish K. Nandakumar, Xiaotian Liao, Alexander G. Bick, Christel M. Middeldorp, Marcin Tabaka +30 more

Author Correction: Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

Nature Biotechnology(2023)10.1038/s41587-023-01942-1

N/A

0.179DataRank · unranked

2 citations

Leif S. Ludwig, Christoph Muus, Satyen H. Gohil, Tongtong Zhao, Zachary Chiang +15 more

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Cancer Cell(2025)10.1016/j.ccell.2025.02.025

N/A

0.165DataRank · unranked

2 citations

Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Santiago Naranjo +13 more

Single-cell multi-omics resolved analysis of mitochondrial genome-wide mutational burden, constraint, and mosaicism

Research Square(2025)10.21203/rs.3.rs-6539733/v1

N/A

0.104DataRank · unranked

1 citations

Yu-Hsin Hsieh, Pauline Kautz, Lena Nitsch, Ambre Giguelay, Janet Liebold +6 more

An N-of-1 Trial of Itacitinib for a Patient with Aplastic Anemia Associated with a Gain-of-Function Variant in STAT1

Research Square(2021)10.21203/rs.3.rs-139401/v1

N/A

0.104DataRank · unranked

1 citations

Travis Hughes, Joshua M. Peters, Caleb A. Lareau, Leif S. Ludwig, Lucas R. Massoth +8 more

Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

Nature(2021)10.1038/s41586-021-04217-4

N/A

0DataRank · unranked

276 citations

Zachary Chiang, Julia W. Morriss, Lindsay M. LaFave, Evan Murray, Isabella Del Priore +10 more

Convergent Epigenetic Evolution Drives Relapse in Acute Myeloid Leukemia

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.10.561642

N/A

0DataRank · unranked

5 citations

Armon Azizi, Thomas Köhnke, Caleb A. Lareau, Asiri Ediwirickrema, M. Ryan Corces +3 more

Data from Longitudinal Single-Cell Dynamics of Chromatin Accessibility and Mitochondrial Mutations in Chronic Lymphocytic Leukemia Mirror Disease History

(2023)10.1158/2159-8290.c.6549383.v1

N/A

0DataRank · unranked

0 citations

Satyen H. Gohil, Caleb A. Lareau, Leif S. Ludwig, Erin M. Parry, Teddy Huang +15 more

Mitochondrial genetics through the lens of single-cell multi-omics

Nature Genetics(2024)10.1038/s41588-024-01794-8

N/A

0DataRank · unranked

47 citations

Caleb A. Lareau, Leif S. Ludwig, Lena Nitsch

A CTCF-binding site in the Mdm1-Il22-Ifng locus shapes cytokine expression profiles and plays a critical role in early Th1 cell fate specification

Immunity(2024)10.1016/j.immuni.2024.04.007

N/A

0DataRank · unranked

16 citations

Hiroyuki Nagashima, Nilisha Fernando, Victor Bass, Jaanam Gopalakrishnan, Sadie Signorella +22 more

Concepts and new developments in droplet-based single cell multi-omics

Trends in biotechnology(2024)10.1016/j.tibtech.2024.07.006

N/A

0DataRank · unranked

10 citations

Caleb A. Lareau, Arthur Chow

Co-opting signalling molecules enables logic-gated control of CAR T cells

Nature(2023)10.1038/s41586-023-05778-2

N/A

0DataRank · unranked

301 citations

Maria Caterina Rotiroti, Louai Labanieh, Lea Wenting Rysavy, Won‐Ju Kim, Caleb A. Lareau +13 more

CAR-engineered lymphocyte persistence is governed by a FAS ligand–FAS autoregulatory circuit

Nature Cancer(2025)10.1038/s43018-025-01009-x

N/A

0DataRank · unranked

30 citations

Tal Cohen, Natalie Zimmerman, Friederike Dündar, Paul Zumbo, Razan Eltilib +18 more

Transient dendritic cell activation diversifies the T cell response to acute infection

Research Square(2021)10.21203/rs.3.rs-1013987/v1

N/A

0DataRank · unranked

0 citations

Kamir J. Hiam-Galvez, Rachel DeBarge, Caleb A. Lareau, Nam Woo Cho, Jacqueline L. Yee +2 more

Cryo-mtscATAC-seq for single-cell mitochondrial DNA genotyping and clonal tracing in archived human tissues

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.17.675534

N/A

0DataRank · unranked

1 citations

Benedikt Obermayer, Marie Cotta, Ekaterina Friebel, Juliana Campo-Garcia, Georgia Charalambous +19 more

Pioneering single-cell intracellular metagenomics: a window into microbe-immune interactions at barrier tissues 2484

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.396

N/A

0DataRank · unranked

0 citations

Antonin Weckel, Tori Tran, Anita Qualls, Andi DeRogatis, Caleb A. Lareau +3 more

Transient dendritic cell activation diversifies the T cell response to acute infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.26.461821

N/A

0DataRank · unranked

1 citations

Rachel DeBarge, Caleb A. Lareau, Nam Woo Cho, Jacqueline L. Yee, Trine Line Hauge Okholm +2 more

Caleb A. Lareau

Indexed papers

Top data-sharing exemplar

Papers