🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jing Zhang

Southwestern Medical Center

ORCID: 0000-0003-4190-3065

Also affiliated with The University of Texas Southwestern Medical Center

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.2Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011586
Top 26%
0.763DataRank
Top 26%24 citations

Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Papers

Driven by 21 papers — median percentile 66. Top paper: “ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2”.

ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011586
Top 26%
0.763DataRank
Top 26%24 citations

Jing Zhang, Kirill E. Medvedev, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins

Genome biology(2020)10.1186/s13059-020-01979-4
N/A
0.648DataRank · unranked
11 citations

Jason Liu, Donghoon Lee, Jo-Jo Feng, Lucas Lochovsky, Shaoke Lou +3 more

Assessment of Nucleic Acid Structure Prediction in CASP16

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70072
N/A
0.470DataRank · unranked
22 citations

Alissa M. Hummer, Shujun He, Rongqing Yuan, Jing Zhang, Thomas G. Karagianes +4 more

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

Scientific Reports(2024)10.1038/s41598-024-60991-x
Top 42%
0.455DataRank
Top 42%12 citations

Jing Zhang, R. Dustin Schaeffer, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome

mSystems(2023)10.1128/msystems.00796-23
N/A
0.312DataRank · unranked
7 citations

R. Dustin Schaeffer, Jing Zhang, Qian Cong, Kim Orth, Nick V. Grishin +1 more

A structural atlas of death domain fold proteins reveals their versatile roles in biology and function

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2426986122
N/A
0.312DataRank · unranked
7 citations

Ankita T. Kandalkar, Julian F. Ehrmann, Alex Tong, Jing Zhang, Qian Cong +2 more

The meadow jumping mouse genome and transcriptome suggest mechanisms of hibernation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.365791
N/A
0.165DataRank · unranked
2 citations

Ethan A. Brem, Jing Zhang, Jessica Alföldi, Jeremy Johnson, Elinor K. Karlsson +4 more

Erythrina stem borer moth in California – New taxonomic status and implications for control of this emerging pest

Journal of Applied Entomology(2022)10.1111/jen.13082
N/A
0.104DataRank · unranked
1 citations

Jing Zhang, Qian Cong, Leina Song, Nick V. Grishin, Andrei Sourakov

Essential and virulence-related protein interactions of pathogens revealed through deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589144
N/A
0DataRank · unranked
2 citations

Jing Zhang, Minkyung Baek, Yaxi Wang, Aditya Krishnakumar, Jimin Pei +10 more

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.30.577995
N/A
0DataRank · unranked
0 citations

Jing Zhang, R. Dustin Schaeffer, Lisa N. Kinch, Qian Cong, Nick V. Grishin +1 more

Genetic and microbial analysis of invasiveness for Escherichia coli strains associated with inflammatory bowel disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.23.613251
N/A
0DataRank · unranked
0 citations

Jing Zhang, Lisa N. Kinch, Jinhui Shen, Sydney Field, Jan‐Michael A. Klapproth +6 more

Assessment of Protein Complex Predictions in CASP16 : Are We Making Progress?

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70068
N/A
0DataRank · unranked
8 citations

Rongqing Yuan, Andriy Kryshtafovych, Jimin Pei, Rachael C. Kretsch, R. Dustin Schaeffer +5 more

NUDT5 regulates purine metabolism and thiopurine sensitivity by interacting with PPAT

Science(2025)10.1126/science.adx9717
N/A
0DataRank · unranked
6 citations

Phong Nguyen, Varun Sondhi, Run-Wen Yao, Zhifang Lu, Tao Dai +22 more

Refinement and curation of homologous groups facilitated by structure prediction

Protein Science(2025)10.1002/pro.70074
N/A
0DataRank · unranked
0 citations

Jimin Pei, Jing Zhang, Qian Cong, Nick V. Grishin, R. Dustin Schaeffer

Structures of core eukaryotic protein complexes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.30.462231
N/A
0DataRank · unranked
15 citations

Jimin Pei, Minkyung Baek, Aditya Krishnakumar, Ivan Anishchenko, Sergey Ovchinnikov +22 more

DPAM: A Domain Parser for AlphaFold Models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.22.509116
N/A
0DataRank · unranked
6 citations

R. Dustin Schaeffer, Jesse Durham, Qian Cong, Nick V. Grishin, Jing Zhang

Classification of domains in predicted structures of the human proteome

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2214069120
N/A
0DataRank · unranked
44 citations

Jing Zhang, Lisa N. Kinch, Jimin Pei, Qian Cong, Nick V. Grishin +1 more

Genetic and Microbial Analysis of Invasiveness for Escherichia coli Strains Associated With Inflammatory Bowel Disease

Cellular and Molecular Gastroenterology and Hepatology(2024)10.1016/j.jcmgh.2024.101451
N/A
0DataRank · unranked
4 citations

Jing Zhang, Lisa N. Kinch, Jinhui Shen, Sydney Field, Shahanshah Khan +7 more

DPAM-AI: a domain parser for AlphaFold models powered by artificial intelligence

Bioinformatics(2024)10.1093/bioinformatics/btae740
N/A
0DataRank · unranked
2 citations

Jing Zhang, R. Dustin Schaeffer, Qian Cong, Jesse Durham

Assessing predictions on fitness effects of missense variants in HMBS in CAGI6

Human Genetics(2024)10.1007/s00439-024-02680-3
N/A
0DataRank · unranked
2 citations

Lisa N. Kinch, Panagiotis Katsonis, Olivier Lichtarge, Milind Jagota, Yun S. Song +26 more

Computing the Human Interactome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.01.615885
N/A
0DataRank · unranked
30 citations

Ian R. Humphreys, Jimin Pei, Jinuk Kim, Chulwon Choi, Rongqing Yuan +7 more