Jens Luebeck

Also affiliated with University of Washington Tacoma

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Data from Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription

(2023)10.1158/1078-0432.c.6531387.v1

Top 100%

0DataRank

Top 100%0 citations

Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren +12 more

Papers

Driven by 33 papers — median percentile 0. Top paper: “Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers”.

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers

Nature Genetics(2020)10.1038/s41588-020-0678-2

N/A

9.9DataRank · unranked

641 citations

Nam Nguyen, Kristen M. Turner, Sihan Wu, Amit D. Gujar, Jens Luebeck +15 more

Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA

Nature(2022)10.1038/s41586-022-04398-6

N/A

2.9DataRank · unranked

170 citations

Jens Luebeck, Mia Petljak, Azhar Khandekar, Mark Barnes, Tongwu Zhang +8 more

AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications

Nature Communications(2020)10.1038/s41467-020-18099-z

N/A

2.3DataRank · unranked

98 citations

Ceyda Çoruh, Siavash R. Dehkordi, Joshua T. Lange, Kristen M. Turner, Viraj Deshpande +7 more

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect

Nature Communications(2019)10.1038/s41467-018-08200-y

N/A

0.889DataRank · unranked

374 citations

Jens Luebeck, Nam-Phuong D. Nguyen, Mehrdad Bakhtiari, Kristen M. Turner, Richard B. Schwab +4 more

ecDNA hubs drive cooperative intermolecular oncogene expression

Nature(2021)10.1038/s41586-021-04116-8

N/A

0.878DataRank · unranked

347 citations

Kathryn E. Yost, Liangqi Xie, Quanming Shi, Konstantin Helmsauer, Jens Luebeck +29 more

Extrachromosomal DNA in the cancerous transformation of Barrett’s oesophagus

Nature(2023)10.1038/s41586-023-05937-5

N/A

0.789DataRank · unranked

192 citations

Alvin Wei Tian Ng, Patricia C. Galipeau, Xiaohong Li, Carissa A. Sanchez, Annalise Katz‐Summercorn +15 more

Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2210991120

N/A

0.788DataRank · unranked

28 citations

Anugraha Raman, Sebastian Preissl, Jianfang Ning, Shaoping Wu, Tomoyuki Koga +22 more

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

Genome Research(2024)10.1101/gr.279131.124

N/A

0.768DataRank · unranked

34 citations

Matthew G. Jones, Jens Luebeck, Xinxin Bu, Hyerim Yi, King L. Hung +6 more

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

Nature Genetics(2022)10.1038/s41588-022-01190-0

N/A

0.725DataRank · unranked

125 citations

Jens Luebeck, Siavash R. Dehkordi, Caterina I. Colón, Rui Li, Ivy Tsz-Lo Wong +21 more

Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma

Nature Genetics(2023)10.1038/s41588-023-01551-3

N/A

0.631DataRank · unranked

66 citations

Jens Luebeck, Sunita Sridhar, Ivy Tsz-Lo Wong, Deobrat Dixit, Shanqing Wang +43 more

Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-2484

N/A

0.578DataRank · unranked

46 citations

Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren +12 more

Transcriptional immune suppression and up-regulation of double-stranded DNA damage and repair repertoires in ecDNA-containing tumors

eLife(2023)10.7554/elife.88895

N/A

0.510DataRank · unranked

29 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

Inhibition of human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer

Nature Communications(2025)10.1038/s41467-025-57447-9

N/A

0.438DataRank · unranked

11 citations

Jens Luebeck, Kaiyuan Zhu, Joshua T. Lange, Roman Šášik, Chad Phillips +13 more

FaNDOM: Fast nested distance-based seeding of optical maps

Patterns(2021)10.1016/j.patter.2021.100248

N/A

0.425DataRank · unranked

16 citations

Jens Luebeck, Vineet Bafna, Siavash R. Dehkordi

Enhancer activation from transposable elements in extrachromosomal DNA

Nature Cell Biology(2025)10.1038/s41556-025-01788-6

N/A

0.396DataRank · unranked

13 citations

Sedona E. Murphy, Matthew G. Jones, Quanming Shi, Aarohi Bhargava-Shah, Christy Luong +14 more

The landscape of extrachromosomal circular DNA in medulloblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.18.464907

N/A

0.396DataRank · unranked

13 citations

Jens Luebeck, Sameena Wani, Ashutosh Tiwari, Meghana S. Pagadala, Shanqing Wang +26 more

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.28.470285

N/A

0.396DataRank · unranked

13 citations

Jens Luebeck, Siavash R. Dehkordi, Ceyda Çoruh, Julie A. Law, William J. Greenleaf +4 more

Immortalization and transformation of primary cells mediated by engineered ecDNAs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.25.546239

N/A

0.373DataRank · unranked

11 citations

Minsi Zhang, Rui Gao, Melissa A. Yao, Katarzyna M. Głuchowska, Y. Cendón Flórez +14 more

Oncogenic extrachromosomal DNA identification using whole-genome sequencing from formalin-fixed glioblastomas

Annals of Oncology(2024)10.1016/j.annonc.2024.03.008

N/A

0.312DataRank · unranked

7 citations

Jens Luebeck, Andrew Rowan, Eva Grönroos, Valérie Barbe, Mark Fabian +6 more

Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571349

N/A

0.300DataRank · unranked

4 citations

Ivy Tsz-Lo Wong, Jing Ni, Jens Luebeck, Kaiyuan Zhu, Gino Prasad +23 more

Coordinated inheritance of extrachromosomal DNA species in human cancer cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.18.549597

N/A

0.292DataRank · unranked

6 citations

Matthew G. Jones, Ivy Tsz-Lo Wong, Joshua T. Lange, Jens Luebeck, Elisa Scanu +14 more

Transcriptional immune suppression and up-regulation of double-stranded DNA damage and repair repertoires in ecDNA-containing tumors

eLife(2024)10.7554/elife.88895.3

N/A

0.241DataRank · unranked

4 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

Comprehensive analysis of clustered mutations in cancer reveals recurrent APOBEC3 mutagenesis of ecDNA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.27.445689

N/A

0.241DataRank · unranked

4 citations

Jens Luebeck, Mia Petljak, Vineet Bafna, Paul S. Mischel, Reuben S. Harris +2 more

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.15.580594

N/A

0.208DataRank · unranked

3 citations

Matthew G. Jones, Jens Luebeck, Xinxin Bu, Hyerim Yi, King L. Hung +6 more

Transcriptional immune suppression and upregulation of double stranded DNA damage and repair repertoires in ecDNA-containing tumors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.537925

N/A

0.208DataRank · unranked

3 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

Extrachromosomal DNA associates with poor survival across a broad spectrum of childhood solid tumors

medRxiv(2025)10.1101/2025.07.22.24308163

N/A

0.208DataRank · unranked

3 citations

Sunita Sridhar, Eugene Yui‐Ching Chow, Rishaan Kenkre, Jonathan Kirkland, Aditi Dutta +23 more

CRISPR-Cas9 Gene Editing of Hematopoietic Stem Cells from Patients with Friedreich’s Ataxia

Molecular Therapy — Methods & Clinical Development(2020)10.1016/j.omtm.2020.04.018

N/A

0DataRank · unranked

36 citations

Joseph Rainaldi, Jay Sharma, Yanmeng Shi, Joseph H. Haquang, Jens Luebeck +3 more

FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA

NAR Genomics and Bioinformatics(2022)10.1093/nargab/lqac032

N/A

0DataRank · unranked

5 citations

Utkrisht Rajkumar, Nam Nguyen, Shahab Sarmashghi, Jens Luebeck, Jingbo Shang +2 more

Epigenetic dysregulation from chromosomal transit in micronuclei

Nature(2023)10.1038/s41586-023-06084-7

N/A

0DataRank · unranked

118 citations

Duaa H. Al-Rawi, Bhargavi Dameracharla, Ramya Raviram, Bailey S.C.L. Jones, Stephanie Stransky +27 more

Data from Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription

(2023)10.1158/1078-0432.c.6531387.v1

Top 100%

0DataRank

Top 100%0 citations

Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren +12 more

Reviewer #2 (Public Review): Transcriptional immune suppression and upregulation of double stranded DNA damage and repair repertoires in ecDNA-containing tumors

(2024)10.7554/elife.88895.2.sa1

N/A

0DataRank · unranked

0 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity

Nature Communications(2025)10.1038/s41467-025-56670-8

N/A

0DataRank · unranked

22 citations

Ivy Tsz-Lo Wong, Jing Ni, Jens Luebeck, Kaiyuan Zhu, Gino Prasad +25 more

Plasticity of Extrachromosomal and Intrachromosomal BRAF Amplifications in Overcoming Targeted Therapy Dosage Challenges

Cancer Discovery(2021)10.1158/2159-8290.cd-20-0936

N/A

0DataRank · unranked

78 citations

Jenna K. Minami, Arthur Huang, Siavash R. Dehkordi, Shirley H. Lomeli, Jens Luebeck +26 more

Jens Luebeck

Indexed papers

Top data-sharing exemplar

Papers