🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Michael Reich

University of California San Diego Medical Center

ORCID: 0000-0003-4735-5514
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile
0.146Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535621
Top 70%
0.146DataRank
Top 70%1 citations

Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Helga Thorvaldsdóttir +3 more

Papers

Driven by 13 papers — median percentile 30. Top paper: “The landscape of somatic copy-number alteration across human cancers”.

The landscape of somatic copy-number alteration across human cancers

Nature(2010)10.1038/nature08822
N/A
1.2DataRank · unranked
4101 citations

Craig H. Mermel, Dale A. Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan +61 more

Multiclass cancer diagnosis using tumor gene expression signatures

Proceedings of the National Academy of Sciences(2001)10.1073/pnas.211566398
N/A
1.1DataRank · unranked
2044 citations

Pablo Tamayo, Ryan Rifkin, Sayan Mukherjee, Chen-Hsiang Yeang, Michael Angelo +12 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

Nature Protocols(2023)10.1038/s41596-023-00892-x
N/A
0.489DataRank · unranked
25 citations

Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak +13 more

Tangent normalization for somatic copy-number inference in cancer genome analysis

Bioinformatics(2022)10.1093/bioinformatics/btac586
N/A
0.360DataRank · unranked
10 citations

Coyin Oh, Gordon Saksena, Davy Deng, Lindsay Westlake, Barbara Hill +10 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499398
N/A
0.292DataRank · unranked
6 citations

Ashley Tsang, Jacob T. Mitchell, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld +11 more

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

arXiv (Cornell University)(2023)10.48550/arxiv.2306.03255
N/A
0.165DataRank · unranked
2 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, Mary J. Goldman +22 more

NMFClustering: Accessible NMF-based clustering utilizing GPU acceleration

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545370
N/A
0.165DataRank · unranked
2 citations

Edwin Huang, Alexander T. Wenzel, Kenneth Yoshimoto, Ashwyn K. Sharma, Jason K. Sicklick +3 more

Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535621
Top 70%
0.146DataRank
Top 70%1 citations

Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Helga Thorvaldsdóttir +3 more

Informatics at the Frontier of Cancer Research

Cancer Research(2025)10.1158/0008-5472.can-24-2829
N/A
0DataRank · unranked
0 citations

Taxiarchis Botsis, Pablo G. Cámara, Lauren Ciotti, Lee Cooper, Jeremy Goecks +19 more

A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells

STAR Protocols(2021)10.1016/j.xpro.2021.100561
N/A
0DataRank · unranked
2 citations

Kıvılcım Öztürk, Ted Liefeld, Michael Reich, Jill P. Mesirov, Hannah Carter +2 more

NMF Clustering: Accessible NMF-based Clustering Utilizing GPU Acceleration

Journal of Bioinformatics and Systems Biology(2023)10.26502/jbsb.5107072
N/A
0DataRank · unranked
6 citations

Edwin Huang, Alexander T. Wenzel, Kenneth Yoshimoto, Ashwyn K. Sharma, Jason K. Sicklick +3 more

Deciphering the Functional Roles of Individual Cancer Alleles Across Comprehensive Cancer Genomic Studies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.567106
N/A
0DataRank · unranked
1 citations

Stephanie Ting, Bartholomew Tam, Timothy V. Pham, Michael Reich, Jill P. Mesirov +3 more

Genomics to Notebook (g2nb): Extending the Electronic Notebook to Address the Challenges of Bioinformatics Analysis

Journal of Bioinformatics and Systems Biology(2025)10.26502/jbsb.5107096
N/A
0DataRank · unranked
0 citations

Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Edwin Huang +4 more