Catherine Lozupone

Also affiliated with University of Colorado Anschutz Medical Campus

Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental ScienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

15.9Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 33 papers — median percentile 97. Top paper: “A framework for human microbiome research”.

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Nature Biotechnology(2011)10.1038/nbt.1823

Top 3%

6.9DataRank

Top 3%815 citations

Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler +112 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

Proceedings of the National Academy of Sciences(2010)10.1073/pnas.1000080107

N/A

1.4DataRank · unranked

9892 citations

Christian L. Lauber, William A. Walters, Donna Berg-Lyons, Catherine A Lozupone, Peter J. Turnbaugh +4 more

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252.2

Top 30%

0.654DataRank

Top 30%9 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome

The ISME Journal(2020)10.1038/s41396-020-0613-7

N/A

0.550DataRank · unranked

38 citations

Alex Washburne, Michael S. Robeson, Tiffany Prest, Steven K. Schmidt, Catherine Lozupone +1 more

SCNIC: Sparse Correlation Network Investigation for Compositional Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380733

N/A

0.442DataRank · unranked

18 citations

Kumar Thurimella, John Sterrett, Catherine Lozupone, Michael Shaffer

Differential effects of antiretroviral treatment on immunity and gut microbiome composition in people living with HIV in rural versus urban Zimbabwe

Microbiome(2024)10.1186/s40168-023-01718-4

N/A

0.442DataRank · unranked

18 citations

Alessandro Lazzaro, C. Preston Neff, Nichole Nusbacher, Kathryn Boyd, Suzanne Fiorillo +7 more

Disruption of Genes Encoding Putative Zwitterionic Capsular Polysaccharides of Diverse Intestinal Bacteroides Reduces the Induction of Host Anti-Inflammatory Factors

Microbial Ecology(2022)10.1007/s00248-022-02037-1

N/A

0.425DataRank · unranked

16 citations

Eiko Yamada, C. Preston Neff, Jennifer M. Schneider, Brent E. Palmer, Catherine Lozupone +1 more

The Impact of Diet on Clostridioides difficile Infection: A Review

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf233

N/A

0.312DataRank · unranked

7 citations

Heidi J. Silver, Keith Z. Hazleton, Catherine Lozupone, Maribeth R. Nicholson, Melissa Castro

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252

N/A

0.276DataRank · unranked

2 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

Agrarian diet improves metabolic health in HIV-positive men with Prevotella -rich microbiomes: results from a randomized trial

mSystems(2025)10.1128/msystems.01185-25

N/A

0.237DataRank · unranked

3 citations

Jennifer Fouquier, C. Preston Neff, John Sterrett, Tyson Marden, Suzanne Fiorillo +10 more

Dietary fat promotes antibiotic-induced Clostridioides difficile mortality in mice

npj Biofilms and Microbiomes(2022)10.1038/s41522-022-00276-1

N/A

0.165DataRank · unranked

2 citations

Casey Martin, David J. Orlicky, Kathleen L. Arnolds, Nichole Nusbacher, Nancy Moreno-Huizar +4 more

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

Frontiers in Microbiology(2024)10.3389/fmicb.2024.1351678

N/A

0DataRank · unranked

5 citations

Madison Apgar, Angela Sofia Burkhart Colorado, Casey Martin, John Sterrett, Elena S. Wall +4 more

EXPLANA: A user-friendly workflow for EXPLoratory ANAlysis and feature selection in cross-sectional and longitudinal microbiome studies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.20.585968

N/A

0DataRank · unranked

2 citations

Maggie A. Stanislawski, John B. O’Connor, Ashley W. Scadden, Catherine Lozupone, Jennifer Fouquier

Agrarian Diet Improves Metabolic Health in HIV-positive Men with Prevotella-Rich Microbiomes: Results from a Randomized Trial

Research Square(2024)10.21203/rs.3.rs-5349309/v1

N/A

0DataRank · unranked

2 citations

John O’Connor, Jennifer Fouquier, C. Preston Neff, John Sterrett, Tyson Marden +10 more

Appearance of green tea compounds in plasma following acute green tea consumption is modulated by the gut microbiome in mice

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.11.603097

N/A

0DataRank · unranked

0 citations

Kevin D. Quinn, Katrina Doenges, Nichole Nusbacher, Cassandra L. Levens, Mike L. Armstrong +7 more

A capsular polysaccharide from a healthy human microbiota member activates a Lag-3-NK cell axis to restrain colon cancer and augment immunotherapy

Cell Reports(2025)10.1016/j.celrep.2025.116172

N/A

0DataRank · unranked

8 citations

Kaylyn M. Bauer, William W. Tang, Emmanuel Stephen‐Victor, Rickesha Bell, D. Garrett Brown +25 more

Hypothesizing mechanistic links between microbes and disease using knowledge graphs

Scientific Reports(2025)10.1038/s41598-025-91230-6

N/A

0DataRank · unranked

4 citations

Michael Bada, Lawrence E. Hunter, Catherine Lozupone, Brook Santangelo

Appearance of green tea compounds in plasma following acute green tea consumption is modulated by the gut microbiome in mice

Microbiology Spectrum(2025)10.1128/spectrum.01799-24

N/A

0DataRank · unranked

3 citations

Kevin D. Quinn, Katrina Doenges, Nichole Nusbacher, Cassandra L. Levens, Mike L. Armstrong +7 more

EXPLANA: a user-friendly workflow for EXPLoratory ANAlysis and feature selection in cross-sectional and longitudinal microbiome studies

Bioinformatics(2025)10.1093/bioinformatics/btaf658

N/A

0DataRank · unranked

0 citations

Maggie A. Stanislawski, John B. O’Connor, Ashley W. Scadden, Catherine Lozupone, Jennifer Fouquier

Blood type and the microbiome- untangling a complex relationship with lessons from pathogens

Current Opinion in Microbiology(2020)10.1016/j.mib.2020.06.008

N/A

0DataRank · unranked

17 citations

Casey Martin, Catherine Lozupone, Kathleen L. Arnolds

Circulating CD8+ MAIT cells correlate with improved outcomes in anti-PD1 treated melanoma patients

medRxiv(2020)10.1101/2020.08.20.20178988

N/A

0DataRank · unranked

1 citations

Dana M. Davis, Robert J. Van Gulick, Robert J. Torphy, Jessica S.W. Borgers, Jared Klarquist +12 more

Alteration of the gut fecal microbiome in children living with HIV on antiretroviral therapy in Yaounde, Cameroon

Scientific Reports(2021)10.1038/s41598-021-87368-8

N/A

0DataRank · unranked

35 citations

Casey Martin, Aubin Nanfack, Laeticia Grace Yatchou, Nichole Nusbacher, Clement Assob Nguedia +7 more

Systems Analysis of Gut Microbiome Influence on Metabolic Disease in HIV-Positive and High-Risk Populations

mSystems(2021)10.1128/msystems.01178-20

N/A

0DataRank · unranked

18 citations

Kevin Quinn, Jennifer Fouquier, Sam X. Li, Jennifer M. Schneider, Nichole Nusbacher +9 more

CANTARE: finding and visualizing network-based multi-omic predictive models

BMC Bioinformatics(2021)10.1186/s12859-021-04016-8

N/A

0DataRank · unranked

10 citations

Martine Saint-Cyr, Sarah J. Borengasser, Brandie D. Wagner, Catherine Lozupone, Carsten Görg +1 more

Systems analysis of gut microbiome influence on metabolic disease in HIV and high-risk populations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.12.435118

N/A

0DataRank · unranked

2 citations

Kevin Quinn, Jennifer Fouquier, Sam X. Li, Jennifer M. Schneider, Nichole Nusbacher +9 more

specificity : an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.06.467582

N/A

0DataRank · unranked

1 citations

Anthony S. Amend, Sean O. I. Swift, Pacifica S. Sommers, Catherine Lozupone, John L. Darcy

Elevated inflammatory fecal immune factors in men who have sex with men with HIV associate with microbiome composition and gut barrier function

Frontiers in Immunology(2022)10.3389/fimmu.2022.1072720

N/A

0DataRank · unranked

24 citations

Jennifer M. Schneider, C. Preston Neff, Victoria Soesanto, Janet Siebert, Nichole Nusbacher +7 more

specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data

Environmental Microbiome(2022)10.1186/s40793-022-00426-0

N/A

0DataRank · unranked

18 citations

Anthony S. Amend, Sean O. I. Swift, Pacifica S. Sommers, Catherine Lozupone, John L. Darcy

SCNIC: Sparse Correlation Network Investigation for Compositional Data

(2022)10.22541/au.165815492.24601086/v1

N/A

0DataRank · unranked

2 citations

Kumar Thurimella, John Sterrett, Catherine Lozupone, Michael Shaffer

Antiretroviral treatment is less effective at reducing gut microbiome-associated inflammation and T cell activation in people living with HIV in rural versus urban Zimbabwe

Research Square(2023)10.21203/rs.3.rs-3300723/v1

N/A

0DataRank · unranked

0 citations

Angela Sofia Burkhart Colorado, C. Preston Neff, Nichole Nusbacher, Kathryn Boyd, Suzanne Fiorillo +7 more

Characterization of methods for mechanistic inference of the gut microbiome in disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.01.569617

N/A

0DataRank · unranked

0 citations

Lawrence E. Hunter, Catherine Lozupone, Brook Santangelo

Catherine Lozupone

Indexed papers

Top data-sharing exemplar

Papers