Jonathan M. Mudge

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

49.2Author DataRank

Indexed papers

14in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 14 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Ensembl 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa942

Top 2%

7.7DataRank

Top 2%1771 citations

Premanand Achuthan, James E. Allen, Jamie Allen, Jorge Álvarez-Jarreta, M Ridwan Amode +74 more

Papers

Driven by 29 papers — median percentile 93. Top paper: “Ensembl 2021”.

Ensembl 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa942

Top 2%

7.7DataRank

Top 2%1771 citations

Premanand Achuthan, James E. Allen, Jamie Allen, Jorge Álvarez-Jarreta, M Ridwan Amode +74 more

Creating reference gene annotation for the mouse C57BL6/J genome assembly

Mammalian Genome(2015)10.1007/s00335-015-9583-x

Top 3%

6.6DataRank

Top 3%204 citations

Jennifer Harrow, Jonathan M. Mudge

A joint NCBI and EMBL-EBI transcript set for clinical genomics and research

Nature(2022)10.1038/s41586-022-04558-8

Top 3%

6.2DataRank

Top 3%597 citations

Shashikant Pujar, Jane E. Loveland, Alex Astashyn, Ruth Bennett, Andrew Berry +35 more

Ensembl 2024

Nucleic Acids Research(2023)10.1093/nar/gkad1049

Top 3%

5.9DataRank

Top 3%747 citations

M Ridwan Amode, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes +93 more

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases

Nucleic Acids Research(2020)10.1093/nar/gkaa921

Top 4%

5.1DataRank

Top 4%419 citations

Anton I. Petrov, Carlos Eduardo Ribas, ROBERT FINN, Alex Bateman, M. Szymański +41 more

GENCODE: reference annotation for the human and mouse genomes in 2023

Nucleic Acids Research(2022)10.1093/nar/gkac1071

Top 4%

5.1DataRank

Top 4%663 citations

Sílvia Carbonell Sala, Mark Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M. Mudge +57 more

Ensembl 2025

Nucleic Acids Research(2024)10.1093/nar/gkae1071

Top 6%

3.8DataRank

Top 6%587 citations

Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Vianey Paola Barrera-Enriquez +86 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3

Top 8%

2.8DataRank

Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

GENCODE 2025: reference gene annotation for human and mouse

Nucleic Acids Research(2024)10.1093/nar/gkae1078

Top 8%

2.7DataRank

Top 8%348 citations

Sílvia Carbonell Sala, Mark Diekhans, Jose Gonzalez Martinez, Toby Hunt, Irwin Jungreis +51 more

What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100631

N/A

1.8DataRank · unranked

92 citations

Jennifer G. Abelin, Leron W. Kok, Karl R. Clauser, Jonathan M. Mudge, Jorge Ruiz-Orera +5 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550582

Top 20%

0.991DataRank

Top 20%28 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +78 more

A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447896

N/A

0.759DataRank · unranked

22 citations

Jorge Ruiz-Orera, John R. Prensner, Marie A. Brunet, Jose Manuel Gonzalez, Michele Magrane +23 more

The 2024 Report on the Human Proteome from the HUPO Human Proteome Project

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00776

Top 34%

0.585DataRank

Top 34%26 citations

Sandra Orchard, Lydie Lane, Cecilia Lindskog, Charles Pineau, Christopher M. Overall +15 more

High-quality peptide evidence for annotating non-canonical open reading frames as human proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.09.612016

N/A

0.542DataRank · unranked

36 citations

Leron W. Kok, Jonathan M. Mudge, Jorge Ruiz-Orera, Ivo Fierro-Monti, Zhi Sun +38 more

Ensembl 2026

Nucleic Acids Research(2025)10.1093/nar/gkaf1239

Top 39%

0.489DataRank

Top 39%21 citations

Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Vianey Paola Barrera-Enriquez +80 more

Cell type-specific novel long non-coding RNA and circular RNA in the BLUEPRINT hematopoietic transcriptomes atlas

Haematologica(2020)10.3324/haematol.2019.238147

N/A

0.470DataRank · unranked

22 citations

Osagie Izuogu, Natasha Andressa Nogueira Jorge, Denis Seyres, Mariona Bustamante, Frances Burden +22 more

Biophysical characterization of high-confidence, small human proteins

Biophysical Reports(2024)10.1016/j.bpr.2024.100167

N/A

0.208DataRank · unranked

3 citations

Irwin Jungreis, Jeffre Allen, Christina Cleveland, Jonathan M. Mudge, Manolis Kellis +3 more

Programmed ribosomal frameshifting during PLEKHM2 mRNA decoding generates a constitutively active proteoform that supports myocardial function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.30.610563

N/A

0.104DataRank · unranked

1 citations

Raffaella De Pace, Ningyu Ding, Jianchao Zhang, Irwin Jungreis, Gionmattia Carancini +10 more

Evaluation of PE5 entries on the Human Proteome Project Target List

ChemRxiv(2025)10.26434/chemrxiv-2025-jpdvx

Top 100%

0DataRank

Top 100%0 citations

Marie Andken, Jonathan M. Mudge, Michele Magrane, Sandra Orchard, Zhi Sun +2 more

Functional signatures of evolutionarily young CTCF binding sites

BMC Biology(2020)10.1186/s12915-020-00863-8

N/A

0DataRank · unranked

13 citations

Jonathan M. Mudge, Duncan T. Odom, Paul Flicek, Dhoyazan Azazi

Functional signatures of evolutionarily young CTCF binding sites

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.31.928119

N/A

0DataRank · unranked

1 citations

Jonathan M. Mudge, Duncan T. Odom, Paul Flicek, Dhoyazan Azazi

Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals

Nature Communications(2022)10.1038/s41467-022-35595-6

N/A

0DataRank · unranked

28 citations

Stephen J. Kiniry, Dmitry E. Andreev, Jonathan M. Mudge, Pavel V. Baranov, Alla D. Fedorova

Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames

Molecular Cell(2023)10.1016/j.molcel.2023.01.023

N/A

0DataRank · unranked

161 citations

Jana Felicitas Schulz, Jorge Ruiz-Orera, Marieluise Kirchner, Matthias Ziehm, Eleonora Adami +18 more

SCN1A: bioinformatically informed revised boundaries for promoter and enhancer regions

Human Molecular Genetics(2023)10.1093/hmg/ddad015

N/A

0DataRank · unranked

4 citations

Helena Martins Custodio, Adam Frankish, Jonathan M. Mudge, James D. Mills, Sanjay M. Sisodiya +1 more

What can Ribo-seq and proteomics tell us about the non-canonical proteome?

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.16.541049

N/A

0DataRank · unranked

9 citations

Jennifer G. Abelin, Leron W. Kok, Karl R. Clauser, Jonathan M. Mudge, Jorge Ruiz-Orera +4 more

Ribosome Decision Graphs for the Representation of Eukaryotic RNA Translation Complexity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.10.566564

N/A

0DataRank · unranked

4 citations

Michał I. Świrski, Håkon Tjeldnes, Jonathan M. Mudge, Joanna Kufel, Nicola Whiffin +3 more

Ribosome decision graphs for the representation of eukaryotic RNA translation complexity

Genome Research(2024)10.1101/gr.278810.123

N/A

0DataRank · unranked

5 citations

Michał I. Świrski, Håkon Tjeldnes, Jonathan M. Mudge, Joanna Kufel, Nicola Whiffin +3 more

Triple coding in human SRD5A1 mRNA

Research Square(2024)10.21203/rs.3.rs-5390104/v1

N/A

0DataRank · unranked

0 citations

Conor Slattery, Mirriam Baranova-Gurvich, Manon Engels, Oscar Ting, Michał I. Świrski +7 more

Jonathan M. Mudge

Indexed papers

Top data-sharing exemplar

Papers