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What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100631Source: DataRank Database

What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome? is a research paper published in Molecular & Cellular Proteomics (2023). On theSindex it has a DataRank of 1.8. It has been cited 92 times, with 77 citing works in its 1-hop citation network.

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1.8DataRank · unranked

Scored on demand from live citation data

Open Access92 citations · 77 citing works in its network

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Linked data & code

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (31 grants)Impact (FWCI 8.58)OA: goldTopics (41)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 38%Citation Network 62%

Base Score Contribution

0.680

From this paper's citation signal

Citation Network Contribution

1.1

From 56 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 77 citers.

Comparison of software packages for detecting unannotated translated small open reading frames by Ribo-seq
Briefings in Bioinformatics202418 citations36 referencesContributes 0.082
Upstream open reading frames may contain hundreds of novel human exons
PLoS Computational Biology20246 citations28 referencesContributes 0.069
RiboSeq.Org: an integrated suite of resources for ribosome profiling data analysis and visualization
Nucleic Acids Research202420 citations57 referencesContributes 0.053
Biological factors and statistical limitations prevent detection of most noncanonical proteins by mass spectrometry
PLoS Biology202343 citations75 referencesContributes 0.050
A review of Ribosome profiling and tools used in Ribo-seq data analysis
Computational and Structural Biotechnology Journal202419 citations65 referencesContributes 0.046

Authors (10)

Jennifer G. Abelin ORCID,Leron W. Kok ORCID,Karl R. Clauser ORCID,Jonathan M. Mudge ORCID,Jorge Ruiz-Orera ORCID

Live enrichment

PubMed:37572790 PMC:PMC10506109 OpenAlex:https://openalex.org/W4385728580

National Human Genome Research Institute

Grant: 2U41HG007234

National Institutes of Health

Grant: P01CA206978

National Science Foundation

Grant: DBI-1933311

Alex's Lemonade Stand Foundation for Childhood Cancer

Grant: 21-23983

St. Baldrick's Foundation

Grant: 931638

Rally Foundation

Grant: 22FN23

National Cancer Institute

Grant: K08-CA263552-01A1

Wellcome Trust

Grant: 108749/Z/15/Z

NHGRI NIH HHS

Grant: U24 HG007234

NIGMS NIH HHS

Grant: R01 GM087221

NCI NIH HHS

Grant: U01 CA271402

NCI NIH HHS

Grant: U24 CA270823

NCI NIH HHS

Grant: U24 CA271075

NCI NIH HHS

Grant: K08 CA263552

NIA NIH HHS

Grant: U19 AG023122

NHGRI NIH HHS

Grant: U41 HG007234

National Institutes of Health

Grant: 5U41HG007234-08

GENCODE: comprehensive genome annotation for human and mouse

National Institutes of Health

Grant: 5U24CA270823-02

Center of Excellence for High Throughput Proteogenomic Characterization

National Institutes of Health

Grant: 5P01CA206978-05

Comprehensive dissection of the CLL genome and phenome to improve patient outcomes

National Institutes of Health

Grant: 5R01GM087221-10

Development of Trans Proteomic Pipeline, an Analysis Suite for Mass Spectrometry

National Science Foundation

Grant: 1933311

CIBR: PTMexchange: Globally harmonized re-analysis and sharing of data on post-translational modifications

National Institutes of Health

Grant: 1U24CA271075-01

Center for comprehensive proteogenomic data analysis

Wellcome Trust

Grant: 108749

ENSEMBL

National Institutes of Health

Grant: 5K08CA263552-03

Deciphering non-canonical translation in high risk medulloblastoma

National Institutes of Health

Grant: 5U19AG023122-04

Consortium to Study the Genetics of Longevity

National Institutes of Health

Grant: 5U01CA271402-04

Proteogenomic Predictors of Recurrence in Non-small Cell Lung Cancer

Musella Foundation For Brain Tumor Research and Information Inc

European Molecular Biology Laboratory

Wellcome Trust

Dr. Miriam and Sheldon G. Adelson Medical Research Foundation

Wellcome Trust

FWCI

8.58

Citation Percentile

1.0%

Citation Trend

2023

2024

2025

2026

goldLicense: cc-by

journalhttp://www.mcponline.org/article/S1535947623001421/pdf

publisherhttp://www.mcponline.org/article/S1535947623001421/pdf

publisherhttps://api.elsevier.com/content/article/PII:S1535947623001421?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S1535947623001421?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.mcpro.2023.100631

Fields of Study

RNA and protein synthesis mechanismsGenomics and Phylogenetic StudiesRNA modifications and cancerHumansProteomeProtein BiosynthesisProteomicsRibosome ProfilingRibosomesOpen Reading Frames

MeSH Terms

Ribosome ProfilingHumansRibosomesProtein BiosynthesisOpen Reading FramesProteomeProteomics

Keywords

ProteomeProteomicsComputational biologyRNA-SeqComputer scienceBiologyBioinformaticsTranscriptomeGeneticsGeneMass spectrometryMicroproteinRibo-seqImmunopeptidomicsNoncanonical OrfOpen Reading FramesCardiovascular and Metabolic DiseasesTopic 1: Genes, Cells and Cell-Based MedicineProtein BiosynthesisPerspectiveHumansHumans; Proteome/metabolism; Protein Biosynthesis; Proteomics/methods; Ribosome Profiling; Ribosomes/metabolism; Open Reading Frames; Ribo-Seq; immunopeptidomics; mass spectrometry; microprotein; noncanonical ORFRibosome ProfilingRibosomes

Sustainable Development Goals

SDG 0: Quality Education