🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Vedant Parikh

Chapman University

ORCID: 0009-0004-3060-8209

MedicineBiochemistry, Genetics and Molecular BiologyComputer ScienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Quantitative Characterization and Prediction of the Binding Determinants and Immune Escape Hotspots for Groups of Broadly Neutralizing Antibodies Against Omicron Variants: Atomistic Modeling of the SARS-CoV-2 Spike Complexes with Antibodies”.

Quantitative Characterization and Prediction of the Binding Determinants and Immune Escape Hotspots for Groups of Broadly Neutralizing Antibodies Against Omicron Variants: Atomistic Modeling of the SARS-CoV-2 Spike Complexes with Antibodies

Biomolecules(2025)10.3390/biom15020249

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0DataRank · unranked

9 citations

Vedant Parikh, Brandon Foley, Nishank Raisinghani, Gennady M. Verkhivker, Mohammed Alshahrani

Integrative Computational Modeling of Distinct Binding Mechanisms for Broadly Neutralizing Antibodies Targeting SARS-CoV-2 Spike Omicron Variants: Balance of Evolutionary and Dynamic Adaptability in Shaping Molecular Determinants of Immune Escape

Viruses(2025)10.3390/v17060741

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0DataRank · unranked

6 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Multiscale Modeling and Dynamic Mutational Profiling of Binding Energetics and Immune Escape for Class I Antibodies with SARS-CoV-2 Spike Protein: Dissecting Mechanisms of High Resistance to Viral Escape Against Emerging Variants

Viruses(2025)10.3390/v17081029

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0DataRank · unranked

3 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Dynamic mutational profiling of binding interactions and allosteric networks in conformational ensembles of the SARS-CoV-2 spike protein complexes with classes of antibodies targeting cryptic binding sites: confluence of binding and allostery determines molecular mechanisms and hotspots of immune escape

Physical Chemistry Chemical Physics(2025)10.1039/d5cp02468d

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0DataRank · unranked

3 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Allosteric Control Overcomes Steric Limitations for Neutralizing Antibodies Targeting Conserved Binding Epitopes of the SARS-CoV-2 Spike Protein: Exploring the Intersection of Binding, Allostery, and Immune Escape with a Multimodal Computational Approach

Biomolecules(2025)10.3390/biom15091340

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0DataRank · unranked

1 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Mutational Scanning and Binding Free Energy Computations of the SARS-CoV-2 Spike Complexes with Distinct Groups of Neutralizing Antibodies: Energetic Drivers of Convergent Evolution of Binding Affinity and Immune Escape Hotspots

International Journal of Molecular Sciences(2025)10.3390/ijms26041507

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0DataRank · unranked

1 citations

Vedant Parikh, Brandon Foley, Nishank Raisinghani, Gennady M. Verkhivker, Mohammed Alshahrani

Mutational Scanning and Binding Free Energy Computations of the SARS-CoV-2 Spike Complexes with Distinct Groups of Neutralizing Antibodies: Energetic Drivers of Convergent Evolution of Binding Affinity and Immune Escape Hotspots

Preprints.org(2025)10.20944/preprints202501.0507.v1

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0DataRank · unranked

2 citations

Vedant Parikh, Brandon Foley, Nishank Raisinghani, Gennady M. Verkhivker, Mohammed Alshahrani

Integrative Computational Modeling of Distinct Binding Mechanisms for Broadly Neutralizing Antibodies Targeting SARS-CoV-2 Spike Omicron Variants: Balance of Evolutionary and Dynamic Adaptability in Shaping Molecular Determinants of Immune Escape

Preprints.org(2025)10.20944/preprints202504.1325.v1

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0DataRank · unranked

2 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Neutral Frustration Landscape Architecture of SARS-CoV-2 Spike-Antibody Interfaces Shapes Immune Evasion Mechanisms for Ultrapotent Neutralizing Antibodies and Determines Pathways of Viral Adaptation: Insights from Integrative Computational Approach

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685956

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0DataRank · unranked

2 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

A Conserved Architecture of Allosteric Communications and Regulatory Hotspots in the KRAS Complexes with Diverse Binding Proteins Controls Mechanisms of Effector Mimicry and Allosteric Modulation : Atomistic Revelations from Molecular Simulations and Mutational Scanning of Binding Energetics and Allostery

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.19.654934

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0DataRank · unranked

1 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Atomistic Profiling of KRAS Interactions with Monobodies and Affimer Proteins Through Ensemble-Based Mutational Scanning Unveils Conserved Residue Networks Linking Cryptic Pockets and Regulating Mechanisms of Binding, Specificity and Allostery

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.03.11.642708

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0DataRank · unranked

0 citations

Vedant Parikh, Brandon Foley, Guang Hu, Gennady M. Verkhivker, Mohammed Alshahrani

Ensemble-Based Binding Free Energy Profiling and Network Analysis of the KRAS Interactions with DARPin Proteins Targeting Distinct Binding Sites: Revealing Molecular Determinants and Universal Architecture of Regulatory Hotspots and Allosteric Binding

Biomolecules(2025)10.3390/biom15060819

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0DataRank · unranked

0 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Conformational Landscaping and Dynamic Mutational Profiling of Binding Interactions and Immune Escape for Broadly Neutralizing Class I Antibodies with SARS-CoV-2 Spike Protein: Distributed Binding Hotspot Networks Underlie Mechanism of Viral Resistance Against Existing Variants

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.07.658468

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0DataRank · unranked

0 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Exploring Dynamic Modulation of Binding, Allostery and Immune Resistance in the SARS-CoV-2 Spike Complexes with Classes of Antibodies Targeting Cryptic Binding Sites: Antibody-Specific Augmentations of Conserved Allosteric Architecture Can Influence Evolution of Viral Escape

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.28.662162

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0DataRank · unranked

0 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Deciphering the Mechanistic Continuum of Broadly Neutralizing Class 4 Antibodies Targeting Conserved Cryptic Epitopes of the SARS-CoV-2 Spike Protein : Operating at the Intersection of Binding, Allostery and Immune Escape

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.10.664240

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0DataRank · unranked

0 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani

Allosteric Control Overcomes Steric Limitations for Neutralizing Antibodies Targeting Conserved Binding Epitopes of the SARS-CoV-2 Spike Protein: Exploring the Intersection of Binding, Allostery and Immune Escape with Multimodal Computational Approach

Preprints.org(2025)10.20944/preprints202507.1050.v1

N/A

0DataRank · unranked

0 citations

Vedant Parikh, Brandon Foley, Gennady M. Verkhivker, Mohammed Alshahrani