🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Miao Yu

Qingdao National Laboratory for Marine Science and Technology

ORCID: 0009-0008-3981-7284

Also affiliated with First Institute of Oceanography, Ecosystem Sciences, Henan Normal University

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.435Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447969

Top 43%

0.435DataRank

Top 43%8 citations

Xingzhao Wen, John Lalith Charles Richard, Zhifei Luo, Tri C. Nguyen, Chien-Ju Chen +14 more

Papers

Driven by 16 papers — median percentile 57. Top paper: “Chromothripsis drives the evolution of gene amplification in cancer”.

Chromothripsis drives the evolution of gene amplification in cancer

Nature(2020)10.1038/s41586-020-03064-z

N/A

0.926DataRank · unranked

478 citations

Simon Brunner, Rona Yaeger, Peter Ly, Yael Nechemia‐Arbely, Dong Hyun Kim +10 more

CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

Nature Genetics(2021)10.1038/s41588-021-00863-6

N/A

0.798DataRank · unranked

203 citations

Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern +13 more

SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

Nature Methods(2021)10.1038/s41592-021-01231-2

N/A

0.688DataRank · unranked

97 citations

Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee, Ziyin Chen +9 more

ZNF143 mediates CTCF-bound promoter–enhancer loops required for murine hematopoietic stem and progenitor cell function

Nature Communications(2021)10.1038/s41467-020-20282-1

N/A

0.678DataRank · unranked

91 citations

Miao Yu, Roberto Tirado-Magallanes, Bin Li, Lingshi Kong, Mingrui Guo +10 more

SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity

Nature Immunology(2023)10.1038/s41590-023-01528-8

N/A

0.659DataRank · unranked

80 citations

Claudia Z. Han, Yi Zhou, Nathanael J. Spann, Payam A. Saisan, Zeyang Shen +17 more

Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath

Science Advances(2021)10.1126/sciadv.abi4360

N/A

0.510DataRank · unranked

29 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447969

Top 43%

0.435DataRank

Top 43%8 citations

Xingzhao Wen, John Lalith Charles Richard, Zhifei Luo, Tri C. Nguyen, Chien-Ju Chen +14 more

Combined dietary omega-3 and omega-6 fatty acids protect against hyperglycemia-associated retinopathy in neonatal mice

Pharmacological Research(2025)10.1016/j.phrs.2025.107877

N/A

0.165DataRank · unranked

2 citations

Hitomi Yagi, Pia Lundgren, Aldina Pivodic, Anders Nilsson, Yan Zeng +17 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single cell Hi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.05.502991

N/A

0.165DataRank · unranked

2 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +4 more

Cholesterol Stimulates the Transient Receptor Potential Melastatin 4 Channel in mpkCCDc14 Cells

Frontiers in Pharmacology(2021)10.3389/fphar.2021.627875

N/A

0.104DataRank · unranked

1 citations

Baolong Zhang, Miao Yu, Yan-Chao Yang, Xue Ao, Di Zhu +8 more

Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution

Nature Biotechnology(2020)10.1038/s41587-020-0643-8

N/A

0DataRank · unranked

51 citations

Anthony Cheng, Xi Gu, Bryan T. Harada, Miao Yu, Tong Wu +4 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

Briefings in Bioinformatics(2023)10.1093/bib/bbad315

N/A

0DataRank · unranked

10 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +6 more

Nutrient supplementation mitigates retinal dysfunction in Acox1 knockout mice with impaired peroxisomal fatty acid oxidation

Journal of Advanced Research(2025)10.1016/j.jare.2025.03.004

N/A

0DataRank · unranked

3 citations

Hitomi Yagi, Chuck T. Chen, Yan Zeng, Deokho Lee, Shen Nian +14 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

UNC Libraries(2025)10.17615/0hcp-4r09

N/A

0DataRank · unranked

0 citations

Ziyin Chen, Shreya Mishra, Hongyu Yu, Xiaoqi Li, Miao Yu +6 more

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.21.001693

N/A

0DataRank · unranked

14 citations

Haruhiko Ishii, Xiong Xiong, Simona Bianco, Franz Meitinger, Rong Hu +11 more

Mapping chromatin loops in single cells

Trends in Genetics(2022)10.1016/j.tig.2022.03.007

N/A

0DataRank · unranked

13 citations

Yun Li, Ming Hu, Miao Yu