Nicole R. Falkowski

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 19 papers. Top paper: “Profiling inflammatory outcomes of Candida albicans colonization and food allergy induction in the murine glandular stomach”.

Profiling inflammatory outcomes of Candida albicans colonization and food allergy induction in the murine glandular stomach

mBio(2024)10.1128/mbio.02113-24

N/A

0.269DataRank · unranked

5 citations

Nicole R. Falkowski, Kelsey Stark, Christopher A. Brown, Gary B. Huffnagle, Karen Zeise

Lung Microbiota Predict Clinical Outcomes in Critically Ill Patients

American Journal of Respiratory and Critical Care Medicine(2020)10.1164/rccm.201907-1487oc

N/A

0DataRank · unranked

370 citations

Marcus J. Schultz, Tom van der Poll, Laura R. A. Schouten, Nicole R. Falkowski, J. Luth +6 more

Application of an ecology-based analytic approach to discriminate signal and noise in low-biomass microbiome studies: whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.08.283259

N/A

0DataRank · unranked

0 citations

Kevin J. Hinkle, Roderick A. McDonald, Nicole R. Falkowski, Gary B. Huffnagle, Robert P. Dickson +1 more

Lung microbiota predict chronic rejection in healthy lung transplant recipients: a prospective cohort study

The Lancet Respiratory Medicine(2021)10.1016/s2213-2600(20)30405-7

N/A

0DataRank · unranked

95 citations

David Wheeler, J. Luth, Nicole R. Falkowski, Natalie Walker, John R. Erb‐Downward +3 more

Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota

Microbiome(2021)10.1186/s40168-021-01055-4

N/A

0DataRank · unranked

60 citations

Kevin J. Hinkle, Roderick A. McDonald, Christopher A. Brown, Nicole R. Falkowski, Gary B. Huffnagle +2 more

Antibiotics cause metabolic changes in mice primarily through microbiome modulation rather than behavioral changes

PLoS ONE(2022)10.1371/journal.pone.0265023

N/A

0DataRank · unranked

38 citations

Roderick A. McDonald, Katherine M. Winner, Nicole R. Falkowski, Christopher A. Brown, Jennifer M. Baker +4 more

The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection

Microbiome(2022)10.1186/s40168-021-01190-y

N/A

0DataRank · unranked

23 citations

Christopher A. Brown, Kevin J. Hinkle, Nicole R. Falkowski, Robert J. Woods, Robert P. Dickson +1 more

Contribution of the Microbiome, Environment, and Genetics to Mucosal Type 2 Immunity and Anaphylaxis in a Murine Food Allergy Model

Frontiers in Allergy(2022)10.3389/falgy.2022.851993

N/A

0DataRank · unranked

18 citations

Nicole R. Falkowski, Christopher A. Brown, Roderick A. McDonald, Gary B. Huffnagle, Kelsey Stark

The Psychrotrophic Pseudomonas lundensis, a Non- aeruginosa Pseudomonad, Has a Type III Secretion System of the Ysc Family, Which Is Transcriptionally Active at 37°C

mBio(2022)10.1128/mbio.03869-21

N/A

0DataRank · unranked

10 citations

Nicole R. Falkowski, Brittan S. Scales, Volha Akulava, Л. Н. Валентович, Gary B. Huffnagle +1 more

Commensal Oral Microbiota, Disease Severity, and Mortality in Fibrotic Lung Disease

American Journal of Respiratory and Critical Care Medicine(2023)10.1164/rccm.202308-1357oc

N/A

0DataRank · unranked

27 citations

John S. Kim, Shwu‐Fan Ma, Piyush Ranjan, Promi Das, Jay H. Lipinski +10 more

A steroid‐resistant cockroach allergen model is associated with lung and cecal microbiome changes

Physiological Reports(2023)10.14814/phy2.15761

N/A

0DataRank · unranked

6 citations

Alexander D. Ethridge, Wendy Fonseca, Kazuma Yagi, Andrew J. Rasky, Susan B. Morris +5 more

INFLAMMATORY RESPONSES TO POLYMICROBIAL INTRA-ABDOMINAL SEPSIS ARE HIGHLY VARIABLE BUT STRONGLY CORRELATED TO ENTEROBACTERIACEAE OUTGROWTH

Shock(2024)10.1097/shk.0000000000002402

N/A

0DataRank · unranked

8 citations

Rishi Chanderraj, Huiyin Deng, Yujing Song, Michael W. Newstead, Joseph D. Metcalf +6 more

Gene expression profiling reveals host defense strategies for restricting Candida albicans invasion and gastritis to the limiting ridge of the murine stomach

Infection and Immunity(2024)10.1128/iai.00438-24

N/A

0DataRank · unranked

1 citations

Nicole R. Falkowski, Joseph D. Metcalf, Christopher A. Brown, Gary B. Huffnagle, Karen Zeise

Antianaerobic Antibiotics, Gut Microbiota, and Sepsis-associated Acute Kidney Injury

American Journal of Respiratory and Critical Care Medicine(2025)10.1164/rccm.202411-2281oc

N/A

0DataRank · unranked

5 citations

Rishi Chanderraj, Mark Nuppnau, Ying He, Annastasia Petouhoff, Nicole R. Falkowski +9 more

RSV infection in neonatal mice and gastrointestinal microbiome alteration contribute to allergic predisposition

Mucosal Immunology(2025)10.1016/j.mucimm.2025.04.007

N/A

0DataRank · unranked

3 citations

Kazuma Yagi, Llilian Arzola-Martínez, Andrew J. Rasky, Susan B. Morris, Nicole R. Falkowski +3 more

Genomic and transcriptomic insights into vertebrate host-specific Lactobacillus johnsonii adaptation in the gastrointestinal tract

mSphere(2025)10.1128/msphere.00052-25

N/A

0DataRank · unranked

2 citations

Nicole R. Falkowski, Gary B. Huffnagle, Keerthikka Ravi

MIDAS: rapid, multiplexed molecular profiling for integrated host–pathogen analysis

Nature Communications(2025)10.1038/s41467-025-67391-3

N/A

0DataRank · unranked

2 citations

Mohammad Asadi Tokmedash, Matthew J. Allen, Cameron Gruich, Jun Hee Choi, Changheon Kim +7 more

Lung and gut microbiota are altered by hyperoxia and contribute to oxygen-induced lung injury in mice

Science Translational Medicine(2020)10.1126/scitranslmed.aau9959

N/A

0DataRank · unranked

172 citations

Michael W. Sjoding, Antonia P. Popova, Tracy X. Cui, Matthew J. Hoostal, Thomas M. Schmidt +10 more

Alveolar metabolite availability facilitates secondary infection by Pseudomonas aeruginosa in acutely injured lungs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2024.12.18.629020

N/A

0DataRank · unranked

0 citations

Thomas L. Flott, L. McLellan, Ingrid G. Bustos, J. Luis Guerrero, Lina Méndez +13 more