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Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future

PROTEOMICS(2022)10.1002/pmic.202200014Source: DataRank Database

Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future is a research paper published in PROTEOMICS (2022). On theSindex it has a DataRank of 0. It has been cited 13 times.

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Open Access13 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (18 grants)Impact (FWCI 0.94)OA: hybridTopics (35)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (3)

Eric W. Deutsch ORCID,Juan Antonio Vizcaino ORCID,Andrew R. Jones ORCID

Live enrichment

PubMed:36074795 PMC:PMC10155627 OpenAlex:https://openalex.org/W4294992160

Wellcome Trust

Grant: 223745/Z/21/Z

National Institutes of Health

Grant: R01GM087221

National Institutes of Health

Grant: R24GM127667

National Institutes of Health

Grant: U19AG023122

European Commission

Grant: 823839

European Proteomics Infrastructure Consortium providing Access

Biotechnology and Biological Sciences Research Council

Grant: BB/P024599/1

In silico mass spectrometry for biologists: Tools and resources for next-generation proteomics

Biotechnology and Biological Sciences Research Council

Grant: BB/T019557/1

GRAPPA - Global compRehensive Atlas of Peptide and Protein Abundance

Biotechnology and Biological Sciences Research Council

Grant: BB/T019670/1

GRAPPA - Global compRehensive Atlas of Peptide and Protein Abundance

National Science Foundation

Grant: DBI‐1933311

National Science Foundation

Grant: IOS‐1922871

National Institutes of Health

Grant: 1R24GM127667-01

Advancing data and metadata standards for proteomics mass spectra

Wellcome Trust

Grant: 223745

Extending the PRIDE database ecosystem: PRIDE-Controlled Access (PRIDE-CA) and the PRIDE-Knowledgebase (PRIDE-KB)

National Science Foundation

Grant: 1933311

CIBR: PTMexchange: Globally harmonized re-analysis and sharing of data on post-translational modifications

National Science Foundation

Grant: 1922871

TRTech-PGR: A PeptideAtlas for Arabidopsis thaliana and other plant species; harnessing world-wide proteomics data and mining for biological features

National Institutes of Health

Grant: 5U19AG023122-04

Consortium to Study the Genetics of Longevity

National Institutes of Health

Grant: 5R01GM087221-10

Development of Trans Proteomic Pipeline, an Analysis Suite for Mass Spectrometry

Wellcome Trust

FWCI

0.94

Citation Percentile

0.7%

Citation Trend

2022

2023

2024

2025

2026

hybridLicense: cc-by

journalhttps://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/pmic.202200014

publisherhttps://onlinelibrary.wiley.com/doi/pdf/10.1002/pmic.202200014

publisherhttps://onlinelibrary.wiley.com/doi/full-xml/10.1002/pmic.202200014

publisherhttps://analyticalsciencejournals.onlinelibrary.wiley.com/doi/pdf/10.1002/pmic.202200014

journalhttps://doi.org/10.1002/pmic.202200014

Fields of Study

Biomedical Text Mining and OntologiesAdvanced Proteomics Techniques and ApplicationsScientific Computing and Data Management0301 basic medicine0303 health sciences03 medical and health sciencesProteomicsProteomeMass SpectrometryComputational Biology

MeSH Terms

Mass SpectrometryComputational BiologyProteomeProteomics

Keywords

ProteomicsData sharingCurrent (fluid)Computer scienceData scienceComputational biologyBioinformaticsMedicineBiologyEngineeringPathologyGeneticsAlternative medicineData RepositoriesData StandardsData Independent AcquisitionSpectral LibrariesProteomics DataViewpointsProteomeMass Spectrometry

Sustainable Development Goals

SDG 0: Industry, innovation and infrastructure