Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites

Cell Systems(2025)10.1016/j.cels.2025.101196Source: DataRank Database

A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites is a dataset published in Cell Systems (2025). On theSindex it has a DataRank of 0.574, placing it in the top 34.2% of the data-sharing corpus. It has been cited 20 times, with 15 citing works in its 1-hop citation network.

Top 34%percentile

0.574DataRank

Ranks in the top 34% for downstream scientific impact

Data paper Open Access20 citations · 15 citing works in its network

Free full text

Cite:

Linked data & code

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (13 grants)Impact (FWCI 8.14)OA: hybridTopics (43)Linked Datasets (7)DataCite Reuse (7)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (1/3)

Dataset classification

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

DataRank Breakdown

Base Score 80%Citation Network 20%

Base Score Contribution

0.457

From this paper's citation signal

Citation Network Contribution

0.117

From 7 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 15 citers.

Microbiome-based therapeutics towards healthier aging and longevity
Genome Medicine202541 citations101 referencesContributes 0.037
in silico analysis and comparison of the metabolic capabilities of different organisms by reducing metabolic complexity
bioRxiv (Cold Spring Harbor Laboratory)20252 citations47 referencesContributes 0.023
Culturomics: Deciphering the Microbial Dark Matter in the Oral Cavity
Journal of Dental Research20252 citations60 referencesContributes 0.018
Reconstruction of human metabolic models with large language models
Proceedings of the National Academy of Sciences20264 citations88 referencesContributes 0.018
Longitudinal big biological data in the AI era
Molecular Systems Biology202516 citations168 referencesContributes 0.017

Authors (22)

Timothy Otto Hulshof,Bram Nap ORCID,Filippo Martinelli Boneschi ORCID,Arianna Basile ORCID,Amy O’Brolchain

Live enrichment

PubMed:39947184 OpenAlex:https://openalex.org/W4407391610

NIA NIH HHS

Grant: RF1 AG058942

NIA NIH HHS

Grant: U19 AG063744

Science Foundation Ireland

Grant: 12/RC/2273

Alimentary Pharmabiotic Centre (APC) - Interfacing Food & Medicine

Irish Research eLibrary

Grant: unidentified

unidentified

European Commission

Grant: 757922

Predicting the effects of gut microbiota and diet on an individual’s drug response and safety

European Commission

Grant: 859890

Gut-brain-axis: Targets for improvement of cognition in the elderly

European Commission

Grant: 101000213

Understanding microbiomes of the ruminant holobiont

National Institutes of Health

Grant: 1RF1AG058942-01

Gut Liver Brain Biochemical Axis in Alzheimer's Disease

European Commission

Grant: 817992

ERA-NET Cofund on Blue Bioeconomy - Unlocking the potential of aquatic bioresources

National Institutes of Health

Grant: 5U19AG063744-02

Alzheimer's Gut Microbiome Project

National Institutes of Health

Science Foundation Ireland

European Research Council

FWCI

8.14

Citation Percentile

1.0%

Citation Trend

2025

2026

hybridLicense: cc-by

journalhttp://www.cell.com/article/S2405471225000298/pdf

publisherhttp://www.cell.com/article/S2405471225000298/pdf

publisherhttps://api.elsevier.com/content/article/PII:S2405471225000298?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2405471225000298?httpAccept=text/plain

journalhttps://doi.org/10.1016/j.cels.2025.101196

Fields of Study

Microbial Metabolic Engineering and BioproductionDiet and metabolism studiesGut microbiota and health0206 medical engineering02 engineering and technologyHumansMicrobiotaMetagenomicsMetabolic Networks and PathwaysMetagenomeGenome, BacterialMachine Learning

MeSH Terms

Machine LearningHumansGenome, BacterialMetabolic Networks and PathwaysMetagenomeMetagenomicsMicrobiotaGenome, Microbial

Keywords

BiologyGenomeEvolutionary biologyScale (ratio)Resource (disambiguation)Computational biologyGeneticsGeographyComputer scienceGeneMetabolismMachine LearningMicrobiomeMetabolic ModelingGenome-scale ReconstructionMetagenome-assembled GenomesMicrobiotaHumansMetagenomeMetagenomicsMetabolic Networks and PathwaysGenome, Bacterialgenome-scale reconstruction; machine learning; metabolic modeling; metabolism; metagenome-assembled genomes; microbiome

Sourmash Database: Apollo

10.5281/zenodo.17652349Zenodo

Sourmash Database: Apollo

10.5281/zenodo.17652348Zenodo

Kraken2 Database: AGORA2+APOLLO

10.5281/zenodo.17220680Zenodo

Kraken2 Database: AGORA2+APOLLO

10.5281/zenodo.14884471Zenodo

Kraken2 Database: AGORA2+APOLLO

10.5281/zenodo.16969998Zenodo

Kraken2 Database: AGORA2+APOLLO

10.5281/zenodo.14884472Zenodo