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A promoter-level mammalian expression atlas

Nature(2014)10.1038/nature13182Source: DataRank Database

A promoter-level mammalian expression atlas is a dataset published in Nature (2014). On theSindex it has a DataRank of 8.9, placing it in the top 1.7% of the data-sharing corpus. It has been cited 2,192 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 78/100.

Top 2%percentile

8.9DataRank

Ranks in the top 2% for downstream scientific impact

Data paper Open Access2,192 citations · 100 citing works in its network

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Cite:

Linked data & code

gen igsr

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (18 grants)OA: hybridTopics (77)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, PMC)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (1/3)

Dataset classification

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

78FAIR score

Full FAIR picture · advisory

F Findable

100

A Accessible

I Interoperable

100

R Reusable

superseded rubric · not rankeddeterministic✓ full text read

How the score was derived

This score predates the current agent — it came from the earlier rubric, which blended repository metadata into the number and asked the model for a rating rather than an evidenced verdict. Re-evaluate the paper to score it against the current standards-anchored criteria, where every verdict is backed by a quote from the full text.

F Findable100

detHas a persistent DOI100

DOI present

detIndexed in repositories / literature DBs100

datacite=25, pmcid=True, pmid=True

detResolvable scholarly identifiers (OpenAlex)100

OpenAlex id present

A Accessible70

detOpen Access / files deposited50

files/OA location present but not flagged OA

detFree full text retrievable100

32 OA location(s)

I Interoperable100

detLinked datasets / DataCite relations100

linked_datasets=25, datacite=25

detReferences data via standard accessions100

accessions=2, trials=0

R Reusable42

detClear, open reuse license50

license present (public-domain)

detDemonstrated reuse (downloads)0

downloads=0

detVersioned / maintained0

no version chain

detClassified as a data resource100

is_dataset

Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →

DataRank Breakdown

Base Score 13%Citation Network 87%

Base Score Contribution

1.2

From this paper's citation signal

Citation Network Contribution

7.8

From 100 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 100 citers.

High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa
International Journal of Oral Science20202,942 citations26 referencesContributes 0.307
The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms
Nucleic Acids Research2016312 citations22 referencesContributes 0.261
The UCSC Genome Browser database: 2024 update
Nucleic Acids Research2023365 citations27 referencesContributes 0.219
Rituximab versus tocilizumab in anti-TNF inadequate responder patients with rheumatoid arthritis (R4RA): 16-week outcomes of a stratified, biopsy-driven, multicentre, open-label, phase 4 randomised controlled trial
The Lancet2021322 citations31 referencesContributes 0.186
Integrative analysis of haplotype-resolved epigenomes across human tissues
Nature2015238 citations30 referencesContributes 0.183

Authors (267)

Alistair R. R. Forrest ORCID,J. Kenneth Baillie ORCID,Michiel de Hoon ORCID,Timo Lassmann ORCID,Ivan V. Kulakovskiy ORCID

Live enrichment

PubMed:24670764 PMC:PMC4529748

Biotechnology and Biological Sciences Research Council

Grant: BB/I025018/1

Wellcome Trust

Grant: 103258/Z/13/Z

Biotechnology and Biological Sciences Research Council

Grant: BBS/E/D/20211550

Biotechnology and Biological Sciences Research Council

Grant: BBS/E/D/20231759

Biotechnology and Biological Sciences Research Council

Grant: BBS/E/D/20251969

NIDCR NIH HHS

Grant: R01 DE022969

NIGMS NIH HHS

Grant: R01 GM084875

Biotechnology and Biological Sciences Research Council

Grant: BB/G022771/1

Medical Research Council

Grant: MC_PC_U127597124

Medical Research Council

Grant: MC_UP_1102/1

Novo Nordisk Fonden

Grant: NNF12OC1016371

Biotechnology and Biological Sciences Research Council

Grant: BB/F003722/1

Biotechnology and Biological Sciences Research Council

Grant: BB/I024801/1

Biotechnology and Biological Sciences Research Council

Grant: BBS/E/D/20211552

Biotechnology and Biological Sciences Research Council

Grant: BB/I001107/1

Biotechnology and Biological Sciences Research Council

Grant: BBS/E/D/20211551

Lundbeck Foundation

Grant: R82-2010-6779

Wellcome Trust

Grant: unidentified

unidentified

Influential Citations

hybridLicense: public-domain

HYBRIDhttps://www.nature.com/articles/nature13182.pdf

publisherhttps://www.nature.com/articles/nature13182.pdf

publisherhttp://www.nature.com/articles/nature13182.pdf

publisherhttp://www.nature.com/articles/nature13182

repositoryhttp://hdl.handle.net/2434/825383

Fields of Study

MedicineComputer ScienceBiology0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

Cells, CulturedCell LineAnimalsHumansMiceTranscription FactorsRNA, MessengerCluster AnalysisOrgan SpecificityTranscription, GeneticGene Expression RegulationConserved SequenceGenes, EssentialOpen Reading FramesGenomeTranscription Initiation SiteGene Regulatory NetworksAtlases as TopicPromoter Regions, GeneticMolecular Sequence AnnotationTranscriptome

Keywords

Transcription, GeneticMessengerOpen Reading Frames/geneticsTranscriptome/ geneticstechnology and engineering curriculum and pedagogyMiceEssentialCluster AnalysisGene Regulatory NetworksGenetic/ geneticsEssential/geneticsPromoter Regions, GeneticCells, CulturedConserved SequenceCulturedGenes, EssentialGenomeMessenger/analysis/geneticsMultidisciplinary SciencesOrgan SpecificityScience & Technology - Other TopicsConserved Sequence/geneticsTranscription Initiation SiteTranscription570ScienceCells610Gene Expression Regulation/geneticsCell LinePromoter RegionsAlOpen Reading FramesAtlases as TopicGeneticAnimalsHumansTranscription Factors/metabolismRNA, MessengerGenetic/geneticsMolecular Sequence AnnotationGenesGene Expression Regulation1000 GeneralAnimals; Cell Line; Cells, Cultured; Cluster Analysis; Conserved Sequence; Gene Expression Regulation; Gene Regulatory Networks; Genes, Essential; Genome; Humans; Mice; Open Reading Frames; Organ Specificity; Promoter Regions, Genetic; RNA, Messenger; Transcription Factors; Transcription Initiation Site; Transcription, Genetic; Transcriptome; Atlases as Topic; Molecular Sequence Annotation; MultidisciplinaryGenome/geneticsRNATranscriptomeGene Regulatory Networks/geneticsTranscription Factors

Additional file 5 of New insights into genome annotation in Podospora anserina through re-exploiting multiple RNA-seq data

10.6084/m9.figshare.22606504.v1figshare

Additional file 5 of New insights into genome annotation in Podospora anserina through re-exploiting multiple RNA-seq data

10.6084/m9.figshare.22606504figshare

Additional file 2 of New insights into genome annotation in Podospora anserina through re-exploiting multiple RNA-seq data

10.6084/m9.figshare.22606495.v1figshare

Additional file 2 of New insights into genome annotation in Podospora anserina through re-exploiting multiple RNA-seq data

10.6084/m9.figshare.22606495figshare

Additional file 1 of Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice

10.6084/m9.figshare.14509687.v1figshare

Additional file 1 of Deletion of a non-canonical regulatory sequence causes loss of Scn1a expression and epileptic phenotypes in mice

10.6084/m9.figshare.14509687figshare

Additional file 1 of Reverse-genetics studies of lncRNAs—what we have learnt and paths forward

10.6084/m9.figshare.12127494.v1figshare

Additional file 1 of Reverse-genetics studies of lncRNAs—what we have learnt and paths forward

10.6084/m9.figshare.12127494figshare

Additional file 1 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study

10.6084/m9.figshare.12284981.v1figshare

Additional file 1 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study

10.6084/m9.figshare.12284981figshare

Additional file 8 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study

10.6084/m9.figshare.12285044.v1figshare

Additional file 8 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study

10.6084/m9.figshare.12285044figshare

Additional file 1 of A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease

10.6084/m9.figshare.13181407.v1figshare

Additional file 1 of A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease

10.6084/m9.figshare.13181407figshare

Additional file 12 of Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition

10.6084/m9.figshare.13311160.v1figshare

Additional file 12 of Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition

10.6084/m9.figshare.13311160figshare

Additional file 1 of High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

10.6084/m9.figshare.13578693.v1figshare

Additional file 1 of High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

10.6084/m9.figshare.13578693figshare

Additional file 7 of High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

10.6084/m9.figshare.13578711.v1figshare

Additional file 7 of High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts

10.6084/m9.figshare.13578711figshare

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A promoter-level mammalian expression atlas

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (267)

Funding (18 grants)

Impact

Open Access

Topics

Linked Datasets (25)

Annotations (Europe PMC)

Related Papers (10)