A temporal extracellular transcriptome atlas of human pre-implantation development is a dataset published in Cell Genomics (2024). On theSindex it has a DataRank of 0.476, placing it in the top 40.1% of the data-sharing corpus. It has been cited 12 times, with 12 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 40% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Processed SILVER-seq data This paper GEO: GSE227442”
The paper provides a GEO accession (GSE227442), which is a persistent identifier scheme recognized by the rubric. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The processed SILVER-seq data have been deposited at Gene Expression Omnibus (GEO).”
GEO is a recognized data repository.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Processed SILVER-seq data This paper GEO: GSE227442”
The dataset identifier (GSE227442) appears in the key resources table (body text) but not in the reference list, so it is a body-text occurrence. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The processed SILVER-seq data have been deposited at Gene Expression Omnibus (GEO). Accession numbers are listed in the key resources table.”
The statement points to a repository with an accession, placing it in Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1. Overview of the exRNA sequencing libraries”
The paper includes a table that itemises the dataset by developmental stage, number of droplets, and libraries.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The processed SILVER-seq data have been deposited at Gene Expression Omnibus (GEO).”
The processed data are deposited in a public repository with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The processed SILVER-seq data have been deposited at Gene Expression Omnibus (GEO).”
No explicit access-level label is applied, but the text describes an action of depositing in GEO, from which access can be inferred.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The raw sequencing data is withheld from public repositories to safeguard participant privacy and confidentiality.”
The paper does not name a gatekeeper for the accessible processed data; the raw data are withheld, and the processed data are in an open repository with no gatekeeper.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not provide any timing or persistence commitment for the data. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not specify the file format of the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not name a data or metadata community standard applied to the data; Gene Ontology is used for analysis but not as a data standard.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Code of analysis is available at Zenodo: https://doi.org/10.5281/zenodo.10129614”
The paper provides identifiers for the reference genome (GCF_000001405.40) and the analysis code (Zenodo DOI), which are external resources. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not attach a license to the data; the article license is not a data license.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
The paper does not provide a version token or date to identify the snapshot of the data; the GEO accession is a persistent identifier but not a version statement.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Code of analysis is available at Zenodo: https://doi.org/10.5281/zenodo.10129614”
The paper provides a DOI for the code, which is a persistent, machine-resolvable locator.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work is supported by NIH grants R01HD107206, R01GM138852, and DP1DK126138 and a Kruger research grant.”
The paper provides specific grant numbers (R01HD107206, etc.) attached to a funder (NIH).
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“The constructed libraries were sequenced by an Illumina NovaSeq 6000 sequencer with 2 × 50 bp read length.”— not found in the paper; verdict downgraded
The paper names the specific sequencing instrument (Illumina NovaSeq 6000) used to produce the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1. Overview of the exRNA sequencing libraries”
The definitions of the dataset's variables (e.g., developmental stage, number of droplets, library size) are provided in Table 1 inside the article, but no separate documentation object (README, codebook) is said to accompany the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.385
From this paper's citation signal
Citation Network Contribution
0.0911
From 6 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 12 citers.
National Institute of Diabetes and Digestive and Kidney Diseases Division of Diabetes Endocrinology and Metabolic Diseases
Grant: DP1DK126138
Institute of Human Development Child and Youth Health
Grant: R01HD107206
National Institute of General Medical Sciences
Grant: R01GM138852
National Institutes of Health
Grant: 5DP1DK126138-05
Extremely high-throughput mapping of protein, RNA, and chromatin interactions in health and disease
National Institutes of Health
Grant: 5R01GM138852-02
Revealing protein-protein interactions and RNA-protein interactions at genome-scale in two weeks
National Institutes of Health
Grant: 1R01HD107206-01
Single Cell Tracking of 3D Epigenetic Landscape Evolution During Embryonic Development
National Institutes of Health
FWCI
2.30
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords