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Deconvolution of in vivo protein-RNA contacts using fractionated eCLIP-seq

STAR Protocols(2022)10.1016/j.xpro.2022.101823Source: DataRank Database

Deconvolution of in vivo protein-RNA contacts using fractionated eCLIP-seq is a research paper published in STAR Protocols (2022). On theSindex it has a DataRank of 0.241. It has been cited 4 times.

N/A

0.241DataRank · unranked

Scored on demand from live citation data

Open Access4 citations

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Linked data & code

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (16 grants)Impact (FWCI 0.31)OA: goldTopics (44)IDs (PubMed, PMC, OpenAlex)Annotations (3)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.241

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

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Authors (6)

Emma Busarello ORCID,Poorval Joshi ORCID,Bluma J. Lesch ORCID,Stephanie Halene ORCID,Toma Tebaldi ORCID

Live enrichment

PubMed:36595959 PMC:PMC9676202 OpenAlex:https://openalex.org/W4309333102

Italian Association for Cancer Research

Grant: 24883

National Institute of Diabetes and Digestive and Kidney Diseases

Grant: R01DK124788

National Institute of Diabetes and Digestive and Kidney Diseases

Grant: / NIDDK R01DK102792

National Institute of Child Health and Human Development

Grant: R01HD098128

NIDDK NIH HHS

Grant: U54 DK110858

National Institute of Diabetes and Digestive and Kidney Diseases

Grant: U24DK126127

NIDDK NIH HHS

Grant: R01 DK102792

NCATS NIH HHS

Grant: UL1 TR001863

National Institutes of Health

Grant: 5R01DK102792-04

The role of mutant splicing factor SRSF2 in Myelodysplasia

National Institutes of Health

Grant: 1R01DK124788-01A1

The role of m6A RNA modification as modulator of dsRNA induced cell-intrinsic innate immune responses in hematopoiesis

National Institutes of Health

Grant: 5U24DK126127-05

Hematology Central Coordinating Center (HCCC) for the NIDDK Hematology Centers Program

National Institutes of Health

Grant: 5R01HD098128-04

Germline Utx mutation as a model for transgenerational epigenetic inheritance

Yale University

National Institutes of Health

Edward P. Evans Foundation

Frederick A. DeLuca Foundation

FWCI

0.31

Citation Percentile

0.5%

Citation Trend

2023

2025

goldLicense: cc-by-nc-nd

journalhttps://www.sciencedirect.com/science/article/pii/S2666166722007031/pdf

GOLDhttps://www.sciencedirect.com/science/article/pii/S2666166722007031/pdf

publisherhttps://www.sciencedirect.com/science/article/pii/S2666166722007031/pdf

publisherhttps://api.elsevier.com/content/article/PII:S2666166722007031?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2666166722007031?httpAccept=text/plain

Fields of Study

RNA Research and SplicingRNA modifications and cancerRNA and protein synthesis mechanismsMedicineBiologyComputer Science0301 basic medicine0303 health sciences03 medical and health sciencesRNATranscriptomeBinding SitesHigh-Throughput Nucleotide SequencingRNA-Binding Proteins

MeSH Terms

Binding SitesRNARNA-Binding ProteinsHigh-Throughput Nucleotide SequencingTranscriptome

Keywords

RNAComputational biologyImmunoprecipitationRNA-SeqRNA-binding proteinTranscriptomeBiologyChemistryGeneGene expressionGeneticsMolecular biologyCell biologySequencingBioinformaticsProtein expression and purificationProtein BiochemistryRnaseqBioinformatics; Cell Biology; Molecular Biology; Protein Biochemistry; Protein expression and purification; RNAseq; Sequencing; CLIP; RNA binding proteins; RBP; freCLIP; CLIP-seq; protein-RNA interactions; omics; multi-omics; RNA biology; crosslinking and immunoprecipitation; computational biologyScience (General)Binding SitesHigh-Throughput Nucleotide SequencingRNA-Binding ProteinsQ1-390Protocol

Sustainable Development Goals

SDG 3: 3. Good health