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Protocol for differential analysis of pseudouridine modifications using nanopore DRS and unmodified transcriptome control

STAR Protocols(2025)10.1016/j.xpro.2025.103948Source: DataRank Database

Protocol for differential analysis of pseudouridine modifications using nanopore DRS and unmodified transcriptome control is a research paper published in STAR Protocols (2025). On theSindex it has a DataRank of 0. It has been cited 3 times.

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Open Access3 citations

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Enrichment:Funding (5 grants)OA: goldTopics (22)IDs (PubMed, PMC)Annotations (2)

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Findable (1/2)

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Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Michele Meseonznik ORCID,Dylan Bloch ORCID,Sara H. Rouhanifard ORCID,Oleksandra Fanari ORCID

Live enrichment

PubMed:40694472 PMC:PMC12301779

National Human Genome Research Institute

Grant: R01HG011087

National Human Genome Research Institute

Grant: R01HG012856

National Institutes of Health

Grant: 1R01HG011087-01

Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptases

National Institutes of Health

Grant: 1R01HG012856-01

Synthetic mRNA Control Set for Nanopore-Based Pseudouridine Modification Profiling in Human Transcriptomes

National Institutes of Health

goldLicense: cc-by-nc

publisherhttps://doi.org/10.1016/j.xpro.2025.103948

publisherhttps://api.elsevier.com/content/article/PII:S2666166725003545?httpAccept=text/xml

publisherhttps://api.elsevier.com/content/article/PII:S2666166725003545?httpAccept=text/plain

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/12301779

repositoryhttps://doaj.org/article/ba5ba675b6ad482a9cf3df022cc0a550

MeSH Terms

HumansRNA, MessengerPseudouridineSequence Analysis, RNANanoporesTranscriptome

Keywords

Molecular biologyGeneticsSequence analysisBioinformaticsGenomicsGene ExpressionRna-seqScience (General)Sequence Analysis, RNAQ1-390NanoporesProtocolHumansRNA, MessengerTranscriptomePseudouridine