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Systematic discovery of complex insertions and deletions in human cancers

Nature Medicine(2015)10.1038/nm.4002Source: DataRank Database

Systematic discovery of complex insertions and deletions in human cancers is a research paper published in Nature Medicine (2015). On theSindex it has a DataRank of 4.4. It has been cited 131 times, with 89 citing works in its 1-hop citation network.

N/A

4.4DataRank · unranked

Scored on demand from live citation data

Open Access131 citations · 89 citing works in its network

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (6 grants)Impact (FWCI 4.01)OA: greenTopics (53)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 17%Citation Network 83%

Base Score Contribution

0.732

From this paper's citation signal

Citation Network Contribution

3.7

From 77 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 89 citers.

indelPost: harmonizing ambiguities in simple and complex indel alignments
Bioinformatics202128 citations18 referencesContributes 0.187
DeepSV: accurate calling of genomic deletions from high-throughput sequencing data using deep convolutional neural network
BMC Bioinformatics201962 citations23 referencesContributes 0.180
Clinical Validation of a Next-Generation Sequencing Genomic Oncology Panel via Cross-Platform Benchmarking against Established Amplicon Sequencing Assays
Journal of Molecular Diagnostics2016147 citations31 referencesContributes 0.161
Fitness Effects of Single Amino Acid Insertions and Deletions in TEM-1 β-Lactamase
Journal of Molecular Biology201952 citations28 referencesContributes 0.142
INDELseek: detection of complex insertions and deletions from next-generation sequencing data
BMC Genomics201725 citations26 referencesContributes 0.125

Authors (20)

Jiayin Wang ORCID,Eric-Wubbo Lameijer ORCID,Joshua F. McMichael ORCID,Jie Ning ORCID,Michael D. McLellan ORCID

Live enrichment

PubMed:26657142 PMC:PMC5003782 OpenAlex:https://openalex.org/W2194510225

NHGRI NIH HHS

Grant: U01 HG006517

NIGMS NIH HHS

Grant: GM 007067

NIGMS NIH HHS

Grant: T32 GM007067

NCI NIH HHS

Grant: R01 CA180006

NIDDK NIH HHS

Grant: R01DK087960

NHGRI NIH HHS

Grant: T32 HG000045

FWCI

4.01

Citation Percentile

1.0%

Citation Trend

2015

2016

2017

2018

2019

2020

2021

2022

2023

2024

2025

2026

greenLicense: http://www.springer.com/tdm

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/5003782

GREENhttps://www.ncbi.nlm.nih.gov/pmc/articles/5003782

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/5003782

publisherhttp://www.nature.com/articles/nm.4002.pdf

publisherhttp://www.nature.com/articles/nm.4002

Fields of Study

Cancer Genomics and DiagnosticsGenomics and Chromatin DynamicsEpigenetics and DNA MethylationMedicineBiologyCell Line, TumorClass Ia Phosphatidylinositol 3-KinaseDNA HelicasesDNA-Binding ProteinsData MiningErbB ReceptorsGATA3 Transcription FactorGenomicsHigh-Throughput Nucleotide SequencingHumansINDEL MutationNeoplasm ProteinsNeoplasmsNuclear ProteinsPTEN PhosphohydrolasePhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-kitProto-Oncogene Proteins c-metTranscription FactorsTumor Suppressor Protein p53Von Hippel-Lindau Tumor Suppressor ProteinX-linked Nuclear Protein

MeSH Terms

X-linked Nuclear ProteinDNA HelicasesDNA-Binding ProteinsHumansNeoplasm ProteinsNeoplasmsNuclear ProteinsTranscription FactorsTumor Suppressor Protein p53Proto-Oncogene Proteins c-kitProto-Oncogene Proteins c-metPhosphatidylinositol 3-KinasesGenomicsCell Line, TumorGATA3 Transcription FactorPTEN PhosphohydrolaseVon Hippel-Lindau Tumor Suppressor ProteinINDEL MutationData MiningClass Ia Phosphatidylinositol 3-KinaseHigh-Throughput Nucleotide SequencingErbB Receptors

Keywords

Computational biologyBiologyGeneticsBioinformatics

Sustainable Development Goals

SDG 0: Good health and well-being

Additional file 1 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779415.v1figshare

Additional file 1 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779415figshare

Additional file 4 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779424.v1figshare

Additional file 4 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779424figshare

Additional file 5 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779427.v1figshare

Additional file 5 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779427figshare

Additional file 6 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779430.v1figshare

Additional file 6 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779430figshare

Additional file 7 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779433.v1figshare

Additional file 7 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779433figshare

Additional file 8 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779436.v1figshare

Additional file 8 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779436figshare

Additional file 9 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779439.v1figshare

Additional file 9 of Comparison of sequencing data processing pipelines and application to underrepresented African human populations

10.6084/m9.figshare.16779439figshare

Additional file 1 of A promising Prognostic risk model for advanced renal cell carcinoma (RCC) with immune-related genes

10.6084/m9.figshare.20147073.v1figshare

Additional file 1 of A promising Prognostic risk model for advanced renal cell carcinoma (RCC) with immune-related genes

10.6084/m9.figshare.20147073figshare

Additional file 2 of A promising Prognostic risk model for advanced renal cell carcinoma (RCC) with immune-related genes

10.6084/m9.figshare.20147076.v1figshare

Additional file 2 of A promising Prognostic risk model for advanced renal cell carcinoma (RCC) with immune-related genes

10.6084/m9.figshare.20147076figshare

Additional file 3 of A promising Prognostic risk model for advanced renal cell carcinoma (RCC) with immune-related genes

10.6084/m9.figshare.20147079.v1figshare

Additional file 3 of A promising Prognostic risk model for advanced renal cell carcinoma (RCC) with immune-related genes

10.6084/m9.figshare.20147079figshare

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Systematic discovery of complex insertions and deletions in human cancers

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (20)

Funding (6 grants)

Impact

Open Access

Topics

Linked Datasets (25)

Annotations (Europe PMC)

Related Papers (10)