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Charting histone modifications and the functional organization of mammalian genomes

Nature Reviews Genetics(2010)10.1038/nrg2905Source: DataRank Database

Charting histone modifications and the functional organization of mammalian genomes is a dataset published in Nature Reviews Genetics (2010). On theSindex it has a DataRank of 7.7, placing it in the top 2.2% of the data-sharing corpus. It has been cited 1,164 times, with 100 citing works in its 1-hop citation network.

Top 2%percentile

7.7DataRank

Ranks in the top 2% for downstream scientific impact

Data paper1,164 citations · 100 citing works in its network

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Linked data & code

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (2 grants)Impact (FWCI 31.49)OA: closedTopics (39)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (0/2)

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 14%Citation Network 86%

Base Score Contribution

1.1

From this paper's citation signal

Citation Network Contribution

6.6

From 100 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 100 citers.

Chromatin state dynamics during blood formation
Science2014843 citations30 referencesContributes 0.225
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
Proceedings of the National Academy of Sciences2013749 citations35 referencesContributes 0.189
H3F3A K27M mutations in thalamic gliomas from young adult patients
Neuro-Oncology2013195 citations28 referencesContributes 0.189
Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters
Journal of Computational Biology2016208 citations30 referencesContributes 0.178
A Functional Element Necessary for Fetal Hemoglobin Silencing
New England Journal of Medicine2011186 citations30 referencesContributes 0.174

Authors (3)

Alon Goren ORCID,Louis Philip Benoit Bouvrette ORCID,Vicky W. Zhou

Live enrichment

PubMed:21116306 OpenAlex:https://openalex.org/W1992213480

Howard Hughes Medical Institute

FWCI

31.49

Citation Percentile

1.0%

Influential Citations

Citation Trend

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closedLicense: http://www.springer.com/tdm

publisherhttp://www.nature.com/articles/nrg2905.pdf

publisherhttp://www.nature.com/articles/nrg2905

journalhttps://doi.org/10.1038/nrg2905

repositoryhttps://pubmed.ncbi.nlm.nih.gov/21116306

Fields of Study

Genomics and Chromatin DynamicsEpigenetics and DNA MethylationRNA modifications and cancerBiologyMedicineAnimalsChromatinGenomeHistonesHumansMiceProtein Processing, Post-TranslationalRegulatory Sequences, Nucleic Acid

MeSH Terms

AnimalsChromatinHistonesHumansProtein Processing, Post-TranslationalRegulatory Sequences, Nucleic AcidGenomeMice

Keywords

ChromatinBiologyChIA-PETHistoneComputational biologyHistone-modifying enzymesChromatin remodelingGenomeEvolutionary biologyHistone codeEpigenomicsFunction (biology)GeneticsNucleosomeDNAGeneGene expressionDNA methylation

Sustainable Development Goals

SDG 0: Zero hunger

Additional file 2 of REPIC: a database for exploring the N6-methyladenosine methylome

10.6084/m9.figshare.12211349.v1figshare

Additional file 2 of REPIC: a database for exploring the N6-methyladenosine methylome

10.6084/m9.figshare.12211349figshare

Additional file 3 of REPIC: a database for exploring the N6-methyladenosine methylome

10.6084/m9.figshare.12211358.v1figshare

Additional file 3 of REPIC: a database for exploring the N6-methyladenosine methylome

10.6084/m9.figshare.12211358figshare

Additional file 1 of Intergenic RNA mainly derives from nascent transcripts of known genes

10.6084/m9.figshare.14545167.v1figshare

Additional file 1 of Intergenic RNA mainly derives from nascent transcripts of known genes

10.6084/m9.figshare.14545167figshare

Additional file 2 of Intergenic RNA mainly derives from nascent transcripts of known genes

10.6084/m9.figshare.14545170.v1figshare

Additional file 2 of Intergenic RNA mainly derives from nascent transcripts of known genes

10.6084/m9.figshare.14545170figshare

Additional file 4 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571895.v1figshare

Additional file 4 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571895figshare

Additional file 5 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571898.v1figshare

Additional file 5 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571898figshare

Additional file 6 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571904.v1figshare

Additional file 6 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571904figshare

Additional file 7 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571907.v1figshare

Additional file 7 of The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

10.6084/m9.figshare.16571907figshare

Additional file 1 of Along the Bos taurus genome, uncover candidate imprinting control regions

10.6084/m9.figshare.20174169.v1figshare

Additional file 1 of Along the Bos taurus genome, uncover candidate imprinting control regions

10.6084/m9.figshare.20174169figshare

Additional file 2 of Along the Bos taurus genome, uncover candidate imprinting control regions

10.6084/m9.figshare.20174172.v1figshare

Additional file 2 of Along the Bos taurus genome, uncover candidate imprinting control regions

10.6084/m9.figshare.20174172figshare

Related Papers (10)

Chromatin Modifications and Their Function

N/A

1.4DataRank · unranked

Cell(2007)

co-cited

10.1016/j.cell.2007.02.005

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

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co-cited

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Top 1%

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co-cited

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co-cited

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Top 2%

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Nature(2011)

co-cited

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Model-based Analysis of ChIP-Seq (MACS)

N/A

1.5DataRank · unranked

Genome Biology(2008)

co-cited

10.1186/gb-2008-9-9-r137

Human DNA methylomes at base resolution show widespread epigenomic differences

N/A

1.3DataRank · unranked

Nature(2009)

co-cited

10.1038/nature08514

An integrated encyclopedia of DNA elements in the human genome

Top 1%

15.3DataRank

Nature(2012)

co-cited

10.1038/nature11247

Histone modifications at human enhancers reflect global cell-type-specific gene expression

N/A

1.2DataRank · unranked

Nature(2009)

co-cited

10.1038/nature07829

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

N/A

0.956DataRank · unranked

Nature Methods(2009)

co-cited

10.1038/nmeth.1313

Charting histone modifications and the functional organization of mammalian genomes

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (3)

Funding (2 grants)

Impact

Open Access

Topics

Linked Datasets (25)

Related Papers (10)