Identifying tumor type and cell type-specific gene expression alterations in pediatric central nervous system tumors is a dataset published in Nature Communications (2024). On theSindex it has a DataRank of 0.317, placing it in the top 53.3% of the data-sharing corpus. It has been cited 5 times, with 4 citing works in its 1-hop citation network. Its calibrated FAIR score is 63/100.
Ranks in the top 53% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“GSE211362”
The paper provides a GEO accession (GSE211362) for its own dataset, which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Gene Expression Omnibus”
The named repository is the Gene Expression Omnibus (GEO), a recognised data repository.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The raw single nuclei-RNA-seq data and the processed data for single nuclei-RNA-seq generated in this study are available in the Gene Expression Omnibus under accession code GSE211362.”
The dataset identifiers appear only in the body text (Data availability section) and not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The raw single nuclei-RNA-seq data and the processed data for single nuclei-RNA-seq generated in this study are available in the Gene Expression Omnibus under accession code GSE211362.”
The statement points to a repository record with an accession. [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“We collect single nuclei RNA-seq data from 84,700 nuclei of 35 pediatric CNS tumors and three non-tumoral pediatric brain tissues”
The dataset's content and size are described in running prose, not in an itemized inventory or structured section.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The raw single nuclei-RNA-seq data and the processed data for single nuclei-RNA-seq generated in this study are available in the Gene Expression Omnibus under accession code GSE211362.”
The data are stated to be available in a public repository with no precondition such as embargo, registration, or application.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw single nuclei-RNA-seq data and the processed data for single nuclei-RNA-seq generated in this study are available in the Gene Expression Omnibus under accession code GSE211362.”
The paper describes the access action (available in GEO) but does not apply an explicit access-level label from the standard vocabulary.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The raw single nuclei-RNA-seq data and the processed data for single nuclei-RNA-seq generated in this study are available in the Gene Expression Omnibus under accession code GSE211362.”
The human-subject data are made openly available in a public repository; no institutional or personal gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“The raw single nuclei-RNA-seq data and the processed data for single nuclei-RNA-seq generated in this study are available in the Gene Expression Omnibus under accession code GSE211362.”
The paper states that the data are available now but does not specify how long they will persist. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token is named anywhere in the text for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No FAIRsharing-registered data or metadata standard is named for the dataset.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“data accessible at NCBI GEO database, accession GSE141460, n=6”— not found in the paper; verdict downgraded
The paper cites other datasets with their accessions. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is stated for the data; the CC-BY license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided to identify the snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“https://github.com/sarahmklee/IntegrativePCNS”— not found in the paper; verdict downgraded
A machine-resolvable code repository URL is given for the study's own code. [downgraded to 'partial' — no verifiable quote from the paper]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R01CA216265”
The paper includes specific award numbers (e.g., R01CA216265) attached to named funders. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Illumina NextSeq500”
The paper names the specific sequencing platform (Illumina NextSeq500) used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Detailed annotation of which pool each sample was multiplexed in can be found in Supplementary Table 1.”
Variable-level definitions are provided inside the article (Supplementary Table 1), not as a separate documentation object shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.269
From this paper's citation signal
Citation Network Contribution
0.0487
From 3 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 4 citers.
Alex’s Lemonade Stand Foundation for Childhood Cancer
Grant: Single-cell Pediatric Cancer Atlas
Dartmouth College
Grant: S.M. Tenney Fellowship
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R01CA253976
U.S. Department of Health & Human Services | National Institutes of Health
Grant: P20GM104416 - 6369
U.S. Department of Health & Human Services | National Institutes of Health
Grant: P20GM130454 - 7702
U.S. Department of Health & Human Services | National Institutes of Health
Grant: R21CA253408
U.S. Department of Health & Human Services | National Institutes of Health
Grant: 1S10OD030242
U.S. Department of Health & Human Services | National Institutes of Health
Grant: S10OD025235
U.S. Department of Health & Human Services | NIH | National Cancer Institute
Grant: 5P30CA023108
U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences
Grant: P20GM130454
NIGMS NIH HHS
Grant: R35 GM146586
NIH HHS
Grant: S10 OD030242
NIGMS NIH HHS
Grant: P20 GM104416
NCI NIH HHS
Grant: R01 CA216265
NCI NIH HHS
Grant: P30 CA023108
National Institutes of Health
Grant: 3P30CA023108-41S8
Cancer Center Support Grant
National Institutes of Health
Grant: 5R01CA216265-05
(PQ3) Immune epigenetic biomarkers of bladder cancer outcomes
National Institutes of Health
Grant: 1S10OD025235-01
10X Genomics Chromium Single-cell Sequencing to Expand Research At Dartmouth
National Institutes of Health
Grant: 5R01CA253976-05
DNA-based Immune Phenotyping in HNSCC for Biomarkers of Response to Immunotherapy
National Institutes of Health
Grant: 3P20GM130454-05S2
NOSI cloud computing Supplement
National Institutes of Health
Grant: 1S10OD030242-01
Acquisition of the NextSeq2000 Sequencing platform to Increase Next Generation Sequencing Throughput While Reducing Costs at Dartmouth
National Institutes of Health
Grant: 1R21CA253408-01
Cancer-specific gene set testing
National Institutes of Health
Grant: 5P20GM104416-10
Center for Molecular Epidemiology
U.S. Department of Health & Human Services | National Institutes of Health
Wellcome Trust
Wellcome Trust
FWCI
1.91
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals