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Birth of protein folds and functions in the virome

Nature(2024)10.1038/s41586-024-07809-ySource: DataRank Database

Birth of protein folds and functions in the virome is a research paper published in Nature (2024). On theSindex it has a DataRank of 1.9. It has been cited 103 times, with 97 citing works in its 1-hop citation network.

N/A

1.9DataRank · unranked

Scored on demand from live citation data

Open Access103 citations · 97 citing works in its network

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Linked data & code

gen alphafold pdb

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (17 grants)Impact (FWCI 33.99)OA: hybridTopics (106)IDs (PubMed, PMC, OpenAlex)Annotations (3)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 36%Citation Network 64%

Base Score Contribution

0.697

From this paper's citation signal

Citation Network Contribution

1.2

From 64 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 97 citers.

BFVD—a large repository of predicted viral protein structures
Nucleic Acids Research202481 citations48 referencesContributes 0.092
ModelArchive: A Deposition Database for Computational Macromolecular Structural Models
Journal of Molecular Biology202569 citations53 referencesContributes 0.080
Exploring the diversity of anti-defense systems across prokaryotes, phages and mobile genetic elements
Nucleic Acids Research202461 citations72 referencesContributes 0.057
Predicting the evolutionary and functional landscapes of viruses with a unified nucleotide-protein language model: LucaVirus
National Science Review20265 citations40 referencesContributes 0.045
Metagenomic-scale analysis of the predicted protein structure universe
bioRxiv (Cold Spring Harbor Laboratory)202511 citations57 referencesContributes 0.044

Authors (6)

Erin Doherty ORCID,Nathan Price ORCID,Daniel Bellieny‐Rabelo ORCID,Yong K. Zhu,Jennifer A. Doudna ORCID

Live enrichment

PubMed:39187718 PMC:PMC11410667 OpenAlex:https://openalex.org/W4401881945

NIAID NIH HHS

Grant: U01 AI142817

NINDS NIH HHS

Grant: U19 NS132303

NIAID NIH HHS

Grant: U54 AI170792

NIAID NIH HHS

Grant: U19 AI135990

NIGMS NIH HHS

Grant: F32 GM153031

NHLBI NIH HHS

Grant: R21 HL173710

NIAID NIH HHS

Grant: UH3 AI150552

National Institutes of Health

Grant: 1U54AI170792-01

HARC: HIV accessory and regulatory complexes

National Institutes of Health

Grant: 1U19AI171110-01

QCRG Pandemic Response Program

National Institutes of Health

Grant: 1F32GM153031-01

Precision Deaminases to Expand the Scope of Diseases Amenable to CRISPR-mediated Correction

National Institutes of Health

Grant: 3U19NS132303-03S1

Admin. Supp.: Correction of Neurological Disease via Allele Specific Excision of Pathogenic Repeats

National Institutes of Health

Grant: 5U01AI142817-04

Expanding CRISPR-Cas editing technology through exploration of novel Cas proteins and DNA repair systems

National Institutes of Health

Grant: 5U19AI135990-03

HPMI: Host Pathogen Mapping Initiative

National Institutes of Health

Grant: 1R21HL173710-01

Targeted Delivery of Cas9 to Lung Epithelial Cells using Enveloped Delivery Vehicles

National Science Foundation

Grant: 2334028

Collaborative Research: TRTech-PGR TRACK: Discovery and characterization of small CRISPR systems for virus-based delivery of heritable editing in plants.

National Institutes of Health

Grant: 5K15DE000205-03

CORRELATIVE CONSTRAINTS OF DIET, MORPHOLOGY AND BEHAVIOR

National Institutes of Health

Grant: 4UH3AI150552-04

Cas9 RNP delivery to immune cells in vivo via molecular targeting

FWCI

33.99

Citation Percentile

1.0%

Citation Trend

2024

2025

2026

hybridLicense: cc-by

journalhttps://doi.org/10.1038/s41586-024-07809-y

publisherhttps://doi.org/10.1038/s41586-024-07809-y

publisherhttps://www.nature.com/articles/s41586-024-07809-y.pdf

publisherhttps://www.nature.com/articles/s41586-024-07809-y

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39187718

Fields of Study

Bacteriophages and microbial interactionsPlant Virus Research StudiesViral gastroenteritis research and epidemiology0301 basic medicine0303 health sciences03 medical and health sciencesAnimalsHumansBacteriophagesHydrolysisImmune EvasionImmunity, InnateModels, MolecularNucleotides, CyclicPhosphoric Diester HydrolasesProtein FoldingViral ProteinsViromeDatabases, ProteinHost Microbial Interactions

MeSH Terms

Host Microbial InteractionsViromeAnimalsBacteriophagesHumansHydrolysisImmunity, InnateModels, MolecularNucleotides, CyclicPhosphoric Diester HydrolasesViral ProteinsProtein FoldingDatabases, ProteinImmune Evasion

Keywords

Human viromeBiologyEvolutionary biologyComputational biologyGeneticsMetagenomicsGeneModels, MolecularVirome (mesh)Protein FoldingGeneral Science & Technology (science-metrix)Bacteriophages (mesh)2.2 Factors relating to the physical environment (hrcs-rac)Models2.2 Factors relating to the physical environmentInnateAnimals (mesh)BacteriophagesImmune Evasion (mesh)Immunization (rcdc)32 Biomedical and Clinical Sciences (for-2020)Databases, ProteinCyclicHumans (mesh)Hydrolysis (mesh)NucleotidesViromeHydrolysisGeneric health relevance (hrcs-hc)Biological SciencesInfection (hrcs-hc)Molecular (mesh)Infectious DiseasesMedical MicrobiologyNucleotides, CyclicInfection570Phosphoric Diester Hydrolases (mesh)General Science & Technology1.1 Normal biological development and functioningHost Microbial Interactions (mesh)Emerging Infectious Diseases (rcdc)ArticleDatabasesViral ProteinsBiodefenseAnimalsHumans3207 Medical Microbiology (for-2020)Biodefense (rcdc)Immune Evasion1.1 Normal biological development and functioning (hrcs-rac)31 Biological Sciences (for-2020)Biomedical and Clinical SciencesHost Microbial InteractionsGenetics (rcdc)Phosphoric Diester HydrolasesProteinImmunityMolecularImmunity, Innate3101 Biochemistry and Cell Biology (for-2020)Protein Folding (mesh)Emerging Infectious DiseasesInfectious Diseases (rcdc)ImmunizationInnate (mesh)Biochemistry and Cell BiologyGeneric health relevanceProtein (mesh)Cyclic (mesh)Viral Proteins (mesh)

Sustainable Development Goals

SDG 0: Life in Land