Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

Nature Biotechnology(2019)10.1038/s41587-019-0191-2Source: DataRank Database

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes is a research paper published in Nature Biotechnology (2019). On theSindex it has a DataRank of 0.909. It has been cited 427 times.

N/A

0.909DataRank · unranked

Scored on demand from live citation data

427 citations

Download PDF

Cite:

Linked data & code

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Impact (FWCI 15.99)OA: closedTopics (43)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (0/2)

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.909

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

Learn more about DataRank methodology →

Authors (20)

Jim Shaw ORCID,Manesh Kalathiyappan,Amanda Hui Qi Ng ORCID,M. Senthil Kumar,Chenhao Li ORCID

Live enrichment

PubMed:31359005 OpenAlex:https://openalex.org/W2965025968

FWCI

15.99

Citation Percentile

1.0%

Influential Citations

Citation Trend

2019

2020

2021

2022

2023

2024

2025

2026

closedLicense: http://www.springer.com/tdm

publisherhttp://www.nature.com/articles/s41587-019-0191-2.pdf

publisherhttp://www.nature.com/articles/s41587-019-0191-2

journalhttps://doi.org/10.1038/s41587-019-0191-2

repositoryhttps://pubmed.ncbi.nlm.nih.gov/31359005

Fields of Study

Genomics and Phylogenetic StudiesGut microbiota and healthBacteriophages and microbial interactionsComputer ScienceMedicineEnvironmental ScienceBiologyAnti-Bacterial AgentsBacteriaDrug Resistance, BacterialFecesHigh-Throughput Nucleotide SequencingHumansMetagenomeMetagenomicsMicrobiotaNanoporesSequence Analysis, DNASoftware

MeSH Terms

Anti-Bacterial AgentsBacteriaFecesHumansSoftwareSequence Analysis, DNADrug Resistance, BacterialMetagenomeMetagenomicsNanoporesHigh-Throughput Nucleotide SequencingMicrobiota

Keywords

MetagenomicsComputational biologyBiologyMicrobiomeGenomeNanopore sequencingHuman Microbiome ProjectSequence assemblyMobile genetic elementsGeneticsGeneTranscriptome

Additional file 1 of High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method

10.6084/m9.figshare.13203412.v1figshare

Additional file 1 of High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method

10.6084/m9.figshare.13203412figshare

Additional file 10 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053275.v1figshare

Additional file 10 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053275figshare

Additional file 11 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053278.v1figshare

Additional file 11 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053278figshare

Additional file 12 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053281.v1figshare

Additional file 12 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053281figshare

Additional file 13 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053284.v1figshare

Additional file 13 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053284figshare

Additional file 3 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053290figshare

Additional file 3 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053290.v1figshare

Additional file 4 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053293figshare

Additional file 4 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053293.v1figshare

Additional file 5 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053296.v1figshare

Additional file 5 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053296figshare

Additional file 6 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053299.v1figshare

Additional file 6 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053299figshare

Additional file 7 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053302.v1figshare

Additional file 7 of Characterization of the human skin resistome and identification of two microbiota cutotypes

10.6084/m9.figshare.14053302figshare

Related Papers (10)

Minimap2: pairwise alignment for nucleotide sequences

N/A

1.5DataRank · unranked

Bioinformatics(2018)

co-cited

10.1093/bioinformatics/bty191

MetaQUAST: evaluation of metagenome assemblies

N/A

0.996DataRank · unranked

Bioinformatics(2015)

co-cited

10.1093/bioinformatics/btv697

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

N/A

1.4DataRank · unranked

Bioinformatics(2015)

co-cited

10.1093/bioinformatics/btv033

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

N/A

1.2DataRank · unranked

PeerJ(2019)

co-cited

10.7717/peerj.7359

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Top 1%

10.2DataRank

Genome Research(2015)

co-cited

10.1101/gr.186072.114

metaFlye: scalable long-read metagenome assembly using repeat graphs

N/A

9.6DataRank · unranked

Nature Methods(2020)

co-cited

10.1038/s41592-020-00971-x

Fast gapped-read alignment with Bowtie 2

N/A

1.6DataRank · unranked

Nature Methods(2012)

co-cited

10.1038/nmeth.1923

Prodigal: prokaryotic gene recognition and translation initiation site identification

N/A

1.4DataRank · unranked

BMC Bioinformatics(2010)

co-cited

10.1186/1471-2105-11-119

Complete, closed bacterial genomes from microbiomes using nanopore sequencing

N/A

9.8DataRank · unranked

Nature Biotechnology(2020)

co-citedsame journal

10.1038/s41587-020-0422-6

A new genomic blueprint of the human gut microbiota

N/A

1.1DataRank · unranked

Nature(2019)

co-cited

10.1038/s41586-019-0965-1

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

FAIR Checklist

DataRank Breakdown

Authors (20)

Impact

Open Access

Topics

Linked Datasets (25)

Related Papers (10)