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UCSC Cell Browser: visualize your single-cell data

Bioinformatics(2021)10.1093/bioinformatics/btab503Source: DataRank Database

UCSC Cell Browser: visualize your single-cell data is a research paper published in Bioinformatics (2021). On theSindex it has a DataRank of 6.9. It has been cited 284 times, with 200 citing works in its 1-hop citation network.

N/A

6.9DataRank · unranked

Scored on demand from live citation data

Open Access284 citations · 200 citing works in its network

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (30 grants)OA: hybridTopics (43)IDs (PubMed, PMC)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

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DataRank Breakdown

Base Score 12%Citation Network 88%

Base Score Contribution

0.848

From this paper's citation signal

Citation Network Contribution

6.0

From 200 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 200 citers.

The Heterogeneity, Parallels, and Divergence of Alveolar Macrophages in Humans and Mice
American Journal of Respiratory Cell and Molecular Biology20245 citations6 referencesContributes 0.299
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data
STAR Protocols20218 citations9 referencesContributes 0.244
Generating colorblind-friendly scatter plots for single-cell data
eLife202210 citations17 referencesContributes 0.141
Meta-Analysis of Human Cancer Single-Cell RNA-Seq Datasets Using the IMMUcan Database
Cancer Research202240 citations37 referencesContributes 0.100
An autonomous activation of interleukin-17 receptor signaling sustains inflammation and promotes disease progression
Immunity202367 citations45 referencesContributes 0.094

Authors (11)

Aparna Bhaduri ORCID,Nikolay S. Markov ORCID,Pablo Moreno ORCID,Tomasz J. Nowakowski ORCID,Irene Papatheodorou ORCID

Live enrichment

PubMed:34244710 PMC:PMC8652023

National Human Genome Research Institute

Grant: 5U41HG002371

National Human Genome Research Institute

Grant: 1U41HG010972

National Human Genome Research Institute

Grant: 5R01HG010329

National Institutes of Health

Grant: U01MH114825

National Institutes of Health

Grant: K99 NS111731

National Institutes of Health

Grant: RF1MH121268

National Institutes of Mental Health

Grant: DP2MH122400

Silicon Valley Community Foundation

Grant: 2017-171531(5022)

California Institute for Regenerative Medicine

Grant: GC1R-06673-C

California Institute for Regenerative Medicine

Grant: GC1R-06673-B

University of California Office of the President Emergency COVID-19 Research Seed Funding

Grant: R00RG2456

Chan Zuckerberg Initiative Foundation

Grant: CZF2019-002438

Chan Zuckerberg Initiative Foundation

Grant: 2018-183498

Chan Zuckerberg Initiative Foundation

Grant: 2018-182800

Simons Foundation

Grant: SFARI 491371

NHGRI NIH HHS

Grant: U41 HG010972

NHGRI NIH HHS

Grant: R01 HG010329

NIMH NIH HHS

Grant: RF1 MH132662

NHGRI NIH HHS

Grant: U24 HG002371

NIAID NIH HHS

Grant: U24 AI183870

NHGRI NIH HHS

Grant: U41 HG002371

National Institutes of Health

Grant: 1DP2MH122400-01

Establishing A Stem Cell Biology Platform for Decoding the Genetic Basis of Human Brain Specializations

National Institutes of Health

Grant: 5U41HG002371-21

The UCSC Genome Browser

National Institutes of Health

Grant: 1RF1MH121268-01

Mapping Developmental Lineage Relationships in the Cerebral Cortex

National Institutes of Health

Grant: 1R01HG010329-01

Evolution of new regulatory networks via genetic arms races between KRAB zinc finger proteins and retrotransposons

National Institutes of Health

Grant: 5U41HG010972-02

The WashU-UCSC-EBI Human Genome Reference Center

National Institutes of Health

Grant: 5U01MH114825-03

A Cellular Resolution Census of the Developing Human Brain

National Institutes of Health

Grant: 1K99NS111731-01

Understanding Brain Development Through the Lens of Metabolism

William K. Bowes Jr Foundation

Brain and Behavior Research Foundation

hybridLicense: cc-by

publisherhttps://academic.oup.com/bioinformatics/article-pdf/37/23/4578/41641625/btab503.pdf

publisherhttp://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btab503/39309755/btab503.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/37/23/4578/50579133/btab503.pdf

repositoryhttps://escholarship.org/uc/item/021868s7

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/8652023

Fields of Study

0301 basic medicine03 medical and health sciences0303 health sciences

MeSH Terms

GenomicsSoftwareDatabases, GeneticMetadata

Keywords

Bioinformatics3102 Bioinformatics and Computational Biology (for-2020)Bioinformatics and Computational BiologyBioengineering08 Information and Computing Sciences (for)Biotechnology (rcdc)Mathematical SciencesDatabasesGeneticInformation and Computing Sciences31 Biological sciences (for-2020)Databases, GeneticGeneticsSoftware (mesh)46 Information and computing sciences (for-2020)MetadataNetworking and Information Technology R&D (NITRD) (rcdc)000Genetics (rcdc)Bioengineering (rcdc)Metadata (mesh)GenomicsBiological Sciences1.5 Resources and infrastructure (underpinning)49 Mathematical sciences (for-2020)Applications Notes0041.5 Resources and infrastructure (underpinning) (hrcs-rac)06 Biological Sciences (for)Networking and Information Technology R&D (NITRD)Bioinformatics (science-metrix)01 Mathematical Sciences (for)Genomics (mesh)Genetic (mesh)SoftwareBiotechnology

Sustainable Development Goals

SDG 3: 3. Good health