🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Nikolay S. Markov

Northwestern University

ORCID: 0000-0002-3659-4387
MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.9Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2
Top 4%
5.0DataRank
Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

Papers

Driven by 32 papers — median percentile 92. Top paper: “UCSC Cell Browser: visualize your single-cell data”.

UCSC Cell Browser: visualize your single-cell data

Bioinformatics(2021)10.1093/bioinformatics/btab503
N/A
6.9DataRank · unranked
284 citations

Aparna Bhaduri, Nikolay S. Markov, Pablo Moreno, Tomasz J. Nowakowski, Irene Papatheodorou +6 more

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2
Top 4%
5.0DataRank
Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

An integrated cell atlas of the human lung in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483747
Top 8%
2.8DataRank
Top 8%97 citations

Daniel Strobl, Luke Zappia, Nikolay S. Markov, Laure-Emmanuelle Zaragosi, Marie-Jeanne Arguel +77 more

Defining and benchmarking open problems in single-cell analysis

Nature Biotechnology(2025)10.1038/s41587-025-02694-w
N/A
0.937DataRank · unranked
29 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Nikolay S. Markov, Luke Zappia +48 more

Local and systemic responses to SARS-CoV-2 infection in children and adults

Nature(2021)10.1038/s41586-021-04345-x
N/A
0.887DataRank · unranked
368 citations

Kaylee B. Worlock, Ni Huang, Rik G.H. Lindeboom, Colin R. Butler, Natsuhiko Kumasaka +56 more

Defining and benchmarking open problems in single-cell analysis

Research Square(2024)10.21203/rs.3.rs-4181617/v1
N/A
0.603DataRank · unranked
17 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay S. Markov +45 more

An integrated cell atlas of the human lung in health and disease

Research Square(2022)10.21203/rs.3.rs-1438584/v1
Top 71%
0.127DataRank
Top 71%1 citations

Avi Srivastava, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov +80 more

Resetting proteostasis with ISRIB promotes epithelial differentiation to attenuate pulmonary fibrosis

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2101100118
N/A
0DataRank · unranked
97 citations

Nikolay S. Markov, Ziyan Lu, Raul Piseaux Aillon, Saul Soberanes, Constance E. Runyan +19 more

Aging imparts cell-autonomous dysfunction to regulatory T cells during recovery from influenza pneumonia

JCI Insight(2021)10.1172/jci.insight.141690
N/A
0DataRank · unranked
80 citations

Kathryn A. Helmin, Manuel A. Torres Acosta, Nikolay S. Markov, Jennifer Yuan-Shih Hu, Anthony M. Joudi +5 more

Age-related Differences in the Nasal Mucosal Immune Response to SARS-CoV-2

American Journal of Respiratory Cell and Molecular Biology(2021)10.1165/rcmb.2021-0292oc
N/A
0DataRank · unranked
48 citations

Andrew D. Prigge, Kishore R. Anekalla, Avani Shukla, Hanh Chi Do Umehara, Leah Setar +13 more

Individual target pharmacokinetic/pharmacodynamic attainment rates among meropenem-treated patients admitted to the ICU with hospital-acquired pneumonia

Journal of Antimicrobial Chemotherapy(2022)10.1093/jac/dkac245
N/A
0DataRank · unranked
4 citations

Marc H. Scheetz, Helen K. Donnelly, Alvaro Donayre, Mengjia Kang, Estefani Diaz +95 more

A machine learning approach identifies unresolving secondary pneumonia as a contributor to mortality in patients with severe pneumonia, including COVID-19

medRxiv(2022)10.1101/2022.09.23.22280118
N/A
0DataRank · unranked
2 citations

Nikolay S. Markov, Thomas Stoeger, Anna Pawlowski, Mengjia Kang, Prasanth Nannapaneni +16 more

Comparing scientific abstracts generated by ChatGPT to real abstracts with detectors and blinded human reviewers

npj Digital Medicine(2023)10.1038/s41746-023-00819-6
N/A
0DataRank · unranked
675 citations

Frederick M. Howard, Nikolay S. Markov, Emma Dyer, Siddhi Ramesh, Yuan Luo +2 more

Machine learning links unresolving secondary pneumonia to mortality in patients with severe pneumonia, including COVID-19

Journal of Clinical Investigation(2023)10.1172/jci170682
N/A
0DataRank · unranked
55 citations

Nikolay S. Markov, Thomas Stoeger, Anna Pawlowski, Mengjia Kang, Prasanth Nannapaneni +15 more

Profibrotic monocyte-derived alveolar macrophages are expanded in patients with persistent respiratory symptoms and radiographic abnormalities after COVID-19

Nature Immunology(2024)10.1038/s41590-024-01975-x
N/A
0DataRank · unranked
55 citations

Connor Puritz, Karolina J. Senkow, Nikolay S. Markov, Estefani Diaz, Emmy Jonasson +27 more

Distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia

Nature Immunology(2024)10.1038/s41590-024-01914-w
N/A
0DataRank · unranked
17 citations

Ziyou Ren, Karolina J. Senkow, Rogan A. Grant, Catherine A. Gao, Elizabeth S. Malsin +91 more

Developing and validating a machine learning model to predict successful next-day extubation in the ICU

medRxiv(2024)10.1101/2024.06.28.24309547
N/A
0DataRank · unranked
3 citations

Alec Peltekian, Mengjia Kang, Nikolay S. Markov, Mengou Zhu, Kevin Grudzinski +16 more

Neutrophil percentages in bronchoalveolar lavage fluid: Implications for diagnosing bacterial pneumonia in patients with immunocompromise and neutropenia

medRxiv(2024)10.1101/2024.05.04.24306709
N/A
0DataRank · unranked
1 citations

S. Fenske, Alec Peltekian, Nikolay S. Markov, Anna Pawlowski, Mengjia Kang +8 more

Antibiotic de-escalation patterns and outcomes in critically ill patients with suspected pneumonia as informed by bronchoalveolar lavage results

European Journal of Clinical Microbiology & Infectious Diseases(2025)10.1007/s10096-025-05144-2
N/A
0DataRank · unranked
10 citations

Chiagozie I. Pickens, Nikolay S. Markov, Anna Pawlowski, Mengjia Kang, Luke V. Rasmussen +7 more

Transitions in lung microbiota landscape associate with distinct patterns of pneumonia progression

Cell Host & Microbe(2025)10.1016/j.chom.2025.11.011
N/A
0DataRank · unranked
5 citations

Stefanie Huttelmaier, Chiagozie I. Pickens, Anahid A. Moghadam, Hiam Abdala‐Valencia, Jiaxian Shen +95 more

Developing and validating machine learning models to predict next-day extubation

Scientific Reports(2025)10.1038/s41598-025-12264-4
N/A
0DataRank · unranked
4 citations

Alec Peltekian, Mengjia Kang, Nikolay S. Markov, Mengou Zhu, Kevin Grudzinski +16 more

An Observational Cohort Study of Bronchoalveolar Lavage Fluid Galactomannan and Aspergillus Culture Positivity in Patients Requiring Mechanical Ventilation

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf090
N/A
0DataRank · unranked
1 citations

Nikolay S. Markov, Chiagozie I. Pickens, Anna Pawlowski, Mengjia Kang, James M. Walter +3 more

Large language models accurately identify immunosuppression in intensive care unit patients

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf141
N/A
0DataRank · unranked
1 citations

Mengjia Kang, M. Bak, Steven Tran, Anna Pawlowski, Prasanth Nannapaneni +87 more

Profibrotic monocyte-derived alveolar macrophages as a biomarker and therapeutic target in systemic sclerosis-associated interstitial lung disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.669006
N/A
0DataRank · unranked
3 citations

Anthony J. Esposito, Karolina J. Senkow, M. Schleck, Luisa Cusick, Zhan Yu +61 more

Machine Learning Analysis of Electronic Health Records Identifies Interstitial Lung Disease and Predicts Mortality in Patients with Systemic Sclerosis

medRxiv(2025)10.1101/2025.06.02.25328786
N/A
0DataRank · unranked
0 citations

Kevin Grudzinski, B. Bemiss, Jane E. Dematte, Carrie Richardson, Mary Carns +27 more

Development of a Pilot Machine Learning Model to Predict Successful Short-Term Treatment Success in Critically Ill Patients With Community-Acquired Pneumonia

CHEST Critical Care(2025)10.1016/j.chstcc.2025.100228
N/A
0DataRank · unranked
0 citations

Wan‐Ting Liao, Alec Peltekian, Nikolay S. Markov, Mengjia Kang, Luke V. Rasmussen +10 more

Lung transplantation for patients with severe COVID-19

Science Translational Medicine(2020)10.1126/scitranslmed.abe4282
N/A
0DataRank · unranked
335 citations

Melissa Querrey, Nikolay S. Markov, Samuel S. Kim, Chitaru Kurihara, Rafael Garza‐Castillon +10 more

Impaired phagocytic function in CX3CR1 + tissue‐resident skeletal muscle macrophages prevents muscle recovery after influenza A virus‐induced pneumonia in old mice

Aging Cell(2020)10.1111/acel.13180
N/A
0DataRank · unranked
39 citations

Lynn C. Welch, Emilia Lecuona, Masahiko Shigemura, Luciano Amarelle, Hiam Abdala‐Valencia +14 more

Alveolitis in severe SARS-CoV-2 pneumonia is driven by self-sustaining circuits between infected alveolar macrophages and T cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.238188
N/A
0DataRank · unranked
25 citations

Luisa Morales‐Nebreda, Nikolay S. Markov, Suchitra Swaminathan, Estefany Rios-Guzman, Darryl A. Abbott +30 more

UCSC Cell Browser: Visualize Your Single-Cell Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.30.361162
N/A
0DataRank · unranked
16 citations

Aparna Bhaduri, Nikolay S. Markov, Pablo Moreno, Tomasz J. Nowakowski, Irene Papatheodorou +5 more

Resetting proteostasis with ISRIB prevents pulmonary fibrosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.26.965566
N/A
0DataRank · unranked
2 citations

Nikolay S. Markov, Ziyan Lu, Raul Piseaux Aillon, Saul Soberanes, Constance E. Runyan +15 more

Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia

Nature(2021)10.1038/s41586-020-03148-w
N/A
0DataRank · unranked
778 citations

Luisa Morales‐Nebreda, Nikolay S. Markov, Suchitra Swaminathan, Melissa Querrey, Estefany Rios-Guzman +59 more