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Benchmarking and integration of methods for deconvoluting spatial transcriptomic data

Bioinformatics(2023)10.1093/bioinformatics/btac805Source: DataRank Database

Benchmarking and integration of methods for deconvoluting spatial transcriptomic data is a research paper published in Bioinformatics (2023). On theSindex it has a DataRank of 0.695. It has been cited 102 times.

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0.695DataRank · unranked

Scored on demand from live citation data

102 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (3 grants)Impact (FWCI 7.26)OA: hybridTopics (17)Linked Datasets (22)DataCite Reuse (22)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (0/2)

Interoperable (2/2)

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Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.695

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

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Authors (2)

Xiaoqiang Sun ORCID,Lulu Yan

Live enrichment

PubMed:36515467 PMC:PMC9825747 OpenAlex:https://openalex.org/W4311404503

National Natural Science Foundation of China

Grant: 62273364

National Natural Science Foundation of China

Grant: 11931019

National Natural Science Foundation of China

Grant: 11871070

FWCI

7.26

Citation Percentile

1.0%

Influential Citations

Citation Trend

2022

2023

2024

2025

2026

hybridLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/article-pdf/39/1/btac805/48520680/btac805.pdf

HYBRIDhttps://academic.oup.com/bioinformatics/article-pdf/39/1/btac805/48520680/btac805.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/39/1/btac805/48520680/btac805.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac805/48416579/btac805.pdf

journalhttps://doi.org/10.1093/bioinformatics/btac805

Fields of Study

Single-cell and spatial transcriptomicsCell Image Analysis TechniquesGene expression and cancer classificationMedicineComputer ScienceBiologyTranscriptomeGene Expression Profiling

MeSH Terms

BenchmarkingGene Expression ProfilingTranscriptome

Keywords

BenchmarkingComputer scienceSoftwareData miningProgramming languageBusiness

Sustainable Development Goals

SDG 0: Industry, innovation and infrastructure

Additional file 3 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666947.v1figshare

Additional file 3 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666947figshare

Additional file 6 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666956.v1figshare

Additional file 6 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666956figshare

Additional file 11 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666971.v1figshare

Additional file 11 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666971figshare

Additional file 5 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666953.v1figshare

Additional file 9 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666965.v1figshare

Additional file 8 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

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Additional file 10 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666968.v1figshare

Additional file 10 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666968figshare

Additional file 9 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666965figshare

Additional file 4 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666950figshare

Additional file 8 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666962.v1figshare

Additional file 7 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666959figshare

Additional file 5 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666953figshare

Additional file 7 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666959.v1figshare

Additional file 4 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.26666950.v1figshare

Additional file 2 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.24993806figshare

Additional file 1 of Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

10.6084/m9.figshare.24993682.v1figshare