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SpatialRNA: a Python package for easy application of Graph Neural Network models on single-molecule spatial transcriptomics dataset

Bioinformatics(2025)10.1093/bioinformatics/btaf659Source: DataRank Database

SpatialRNA: a Python package for easy application of Graph Neural Network models on single-molecule spatial transcriptomics dataset is a research paper published in Bioinformatics (2025). On theSindex it has a DataRank of 0.

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Enrichment:Funding (4 grants)OA: goldTopics (18)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Annika Vannan ORCID,Jonathan A. Kropski ORCID,Nicholas E. Banovich ORCID,Davis J. McCarthy ORCID,Ruqian Lyu ORCID

Live enrichment

PubMed:41390915 PMC:PMC12777972 OpenAlex:https://openalex.org/W4417308526

US National Institutes of Health

Grant: R01HG011886

US National Institutes of Health

Grant: R01HL145372

US National Institutes of Health

Grant: U01HL175444

Australian National Health and Medical Research Council

Grant: GNT1195595

goldLicense: cc-by

journalhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf659/65878361/btaf659.pdf

publisherhttps://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf659/65878361/btaf659.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/42/1/btaf659/65878361/btaf659.pdf

journalhttps://doi.org/10.1093/bioinformatics/btaf659

repositoryhttps://pubmed.ncbi.nlm.nih.gov/41390915

Fields of Study

Single-cell and spatial transcriptomicsBioinformatics and Genomic NetworksRNA regulation and diseaseNeural Networks, ComputerSoftwareTranscriptomeGene Expression Profiling

MeSH Terms

SoftwareNeural Networks, ComputerGene Expression ProfilingTranscriptome

Keywords

Python (programming language)UploadWorkflowDocumentationR packageArtificial neural networkGraph

SpatialRNA: a Python package for easy application of Graph Neural Network models on single-molecule spatial transcriptomics dataset

FAIR Checklist

Authors (5)

Funding (4 grants)

Open Access

Topics

Annotations (Europe PMC)