Davis J. McCarthy

Also affiliated with Melbourne Health, Melbourne Genomics Health Alliance, St Vincents Institute of Medical Research

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “edgeR : a Bioconductor package for differential expression analysis of digital gene expression data”.

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

Bioinformatics(2009)10.1093/bioinformatics/btp616

N/A

1.6DataRank · unranked

44025 citations

Davis J. McCarthy, Gordon K. Smyth, Mark D. Robinson

Eleven grand challenges in single-cell data science

Genome Biology(2020)10.1186/s13059-020-1926-6

N/A

1.1DataRank · unranked

1396 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +49 more

The genetic architecture of type 2 diabetes

Nature(2016)10.1038/nature18642

N/A

1.1DataRank · unranked

1106 citations

Menachem Fromer, Tanya M. Teslovich, Anubha Mahajan, Vineeta Agarwala, Kyle J. Gaulton +334 more

Classification of low quality cells from single-cell RNA-seq data

Genome Biology(2016)10.1186/s13059-016-0888-1

N/A

1.0DataRank · unranked

788 citations

Jong Kyoung Kim, Aleksandra A. Kolodziejczyk, Frederik Otzen Bagger, John C. Marioni, Sarah A. Teichmann +3 more

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

Nature Biotechnology(2020)10.1038/s41587-020-0469-4

N/A

0.940DataRank · unranked

526 citations

Atefeh Lafzi, Catia Moutinho, Christoph Ziegenhain, Davis J. McCarthy, Adrián Álvarez-Varela +40 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885v3

N/A

0.449DataRank · unranked

7 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v2

N/A

0.330DataRank · unranked

5 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

12 Grand Challenges in Single-Cell Data Science

(2019)10.7287/peerj.preprints.27885

N/A

0.228DataRank · unranked

2 citations

Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson +50 more

12 Grand challenges in single-cell data science

(2019)10.7287/peerj.preprints.27885v1

N/A

0.193DataRank · unranked

2 citations

Johannes Köster, Ewa Szcureck, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos +50 more

Going beyond cell clustering and feature aggregation: Is there single cell level information in single-cell ATAC-seq data?

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.04.626927

N/A

0DataRank · unranked

3 citations

Heejung Shim, Davis J. McCarthy, Aaron Wing Cheung Kwok

A hierarchical, count-based model highlights challenges in scATAC-seq data analysis and points to opportunities to extract finer-resolution information

Genome biology(2025)10.1186/s13059-025-03735-y

N/A

0DataRank · unranked

5 citations

Heejung Shim, Davis J. McCarthy, Aaron Wing Cheung Kwok

A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.02.656433

N/A

0DataRank · unranked

1 citations

Ruqian Lyu, Arianna L. Williams-Katek, B Fischer, Annika Vannan, Niran Hadad +12 more

SpatialRNA: a Python package for easy application of Graph Neural Network models on single-molecule spatial transcriptomics dataset

Bioinformatics(2025)10.1093/bioinformatics/btaf659

N/A

0DataRank · unranked

0 citations

Annika Vannan, Jonathan A. Kropski, Nicholas E. Banovich, Davis J. McCarthy, Ruqian Lyu

Properties of structural variants and short tandem repeats associated with gene expression and complex traits

Nature Communications(2020)10.1038/s41467-020-16482-4

N/A

0DataRank · unranked

138 citations

Matteo D’Antonio, Marc Jan Bonder, Craig Smail, Margaret K. R. Donovan, William W. Greenwald +15 more

Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats

Nature Communications(2020)10.1038/s41467-020-16481-5

N/A

0DataRank · unranked

37 citations

Erin N. Smith, Matteo D’Antonio, Marc Jan Bonder, William W. Greenwald, Agnieszka D’Antonio‐Chronowska +14 more

Cell-type-specific and disease-associated expression quantitative trait loci in the human lung

Nature Genetics(2024)10.1038/s41588-024-01702-0

N/A

0DataRank · unranked

95 citations

Christina B. Azodi, Lance Peter, Chase J. Taylor, Sagrika Chugh, Robert Kendle +13 more