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Knowledge-based gene expression classification via matrix factorization

Bioinformatics(2008)10.1093/bioinformatics/btn245Source: DataRank Database

Knowledge-based gene expression classification via matrix factorization is a research paper published in Bioinformatics (2008). On theSindex it has a DataRank of 1.3. It has been cited 39 times, with 25 citing works in its 1-hop citation network.

N/A

1.3DataRank · unranked

Scored on demand from live citation data

Open Access39 citations · 25 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Impact (FWCI 1.82)OA: hybridTopics (20)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 41%Citation Network 59%

Base Score Contribution

0.553

From this paper's citation signal

Citation Network Contribution

0.790

From 21 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 25 citers.

COMPADRE: an R and web resource for pathway activity analysis by component decompositions
Bioinformatics201213 citations20 referencesContributes 0.132
Uncovering the Hidden Risk Architecture of the Schizophrenias: Confirmation in Three Independent Genome-Wide Association Studies
American Journal of Psychiatry2014252 citations42 referencesContributes 0.132
Missing value estimation for DNA microarray gene expression data with principal curves
20103 citations20 referencesContributes 0.069
iPcc: a novel feature extraction method for accurate disease class discovery and prediction
Nucleic Acids Research201322 citations48 referencesContributes 0.065
Comprehensive evaluation of matrix factorization methods for the analysis of DNA microarray gene expression data
BMC Bioinformatics201120 citations47 referencesContributes 0.065

Authors (9)

P. Knollmüller,M. Stetter ORCID,Dominik Lutter ORCID,Ana Maria Tomé ORCID,Fabian Joachim Theis ORCID

Live enrichment

PubMed:18535085 PMC:PMC2638868 OpenAlex:https://openalex.org/W2104608541

FWCI

1.82

Citation Percentile

0.8%

Citation Trend

2012

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2021

2022

2023

hybridLicense: cc-by-nc

journalhttps://academic.oup.com/bioinformatics/article-pdf/24/15/1688/16881616/btn245.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/24/15/1688/16881616/btn245.pdf

publisherhttps://academic.oup.com/bioinformatics/article-pdf/24/15/1688/49049345/bioinformatics_24_15_1688.pdf

journalhttps://doi.org/10.1093/bioinformatics/btn245

repositoryhttps://pubmed.ncbi.nlm.nih.gov/18535085

Fields of Study

Gene expression and cancer classificationGenomic variations and chromosomal abnormalitiesBioinformatics and Genomic Networks

MeSH Terms

AlgorithmsArtificial IntelligencePattern Recognition, AutomatedOligonucleotide Array Sequence AnalysisGene Expression Profiling

Keywords

Non-negative matrix factorizationMatrix decompositionDiscriminative modelComputational biologyPattern recognition (psychology)Computer scienceArtificial intelligenceGeneIndependent component analysisRandom forestBiologyGenetics

Sustainable Development Goals

SDG 0: Reduced inequalities