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Maximum Likelihood Estimation of Species Trees from Gene Trees in the Presence of Ancestral Population Structure

Genome Biology and Evolution(2020)10.1093/gbe/evaa022Source: DataRank Database

Maximum Likelihood Estimation of Species Trees from Gene Trees in the Presence of Ancestral Population Structure is a research paper published in Genome Biology and Evolution (2020). On theSindex it has a DataRank of 0.480. It has been cited 7 times, with 3 citing works in its 1-hop citation network.

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0.480DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access7 citations · 3 citing works in its network

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Linked data & code

doi

Data availability

Repositories this paper deposited data in (declared in PubMed).

Dryad10.5061/dryad.tn47c 10.5061/dryad.f4114

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (15 grants)Impact (FWCI 0.69)OA: goldTopics (32)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 65%Citation Network 35%

Base Score Contribution

0.312

From this paper's citation signal

Citation Network Contribution

0.168

From 3 citing papers with measurable signal

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Top 3 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 3 citers.

CoV Genome Tracker: tracing genomic footprints of Covid-19 pandemic
bioRxiv (Cold Spring Harbor Laboratory)202016 citations23 referencesContributes 0.123
Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N. lirii sp. nov.
PLoS ONE20218 citations53 referencesContributes 0.041
The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia
Journal of Fungi202181 citations132 referencesContributes 0.033

Authors (2)

Michael DeGiorgio ORCID,Hillary Koch ORCID

Live enrichment

PubMed:32022857 PMC:PMC7061232 OpenAlex:https://openalex.org/W3011677418

National Science Foundation

Grant: DEB-1753489

National Science Foundation

Grant: DEB-1949268

National Science Foundation

Grant: BCS-2001063

National Institutes of Health

Grant: R35-GM128590

NIGMS NIH HHS

Grant: T32 GM102057

NIGMS NIH HHS

Grant: R35 GM128590

NHGRI NIH HHS

Grant: F31 HG010574

National Science Foundation

Grant: 1753489

SG: Inferring phylogenies under ancestral population structure

National Institutes of Health

Grant: 5T32GM102057-09

Computation, Bioinformatics, and Statistics (CBIOS) Training Program

National Institutes of Health

Grant: 7R35GM128590-02

Identifying complex modes of adaptation from population-genomic data

National Science Foundation

Grant: 1949268

SG: Inferring phylogenies under ancestral population structure

National Institutes of Health

Grant: 1F31HG010574-01

Statistical methods for differential peak detection in Hi-C data

National Institutes of Health

Grant: 5R35GM128590-07

Identifying complex modes of adaptation from population-genomic data

National Science Foundation

Grant: 2001063

Collaborative Research: Understanding the Deep Ancestry of the Indigenous People of North America

Alfred P. Sloan Foundation

FWCI

0.69

Citation Percentile

0.7%

Citation Trend

2020

2021

2023

2024

2025

goldLicense: cc-by

journalhttps://watermark.silverchair.com/evaa022.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAp8wggKbBgkqhkiG9w0BBwagggKMMIICiAIBADCCAoEGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMshplD_M3JeA3odIrAgEQgIICUk-RADWP7B0aOxNGc8HH-LmR85l_kuS46ec_MvQ1y9VbYvdn2hN5LKM5_Qe-LoJLoLLmXgo3Wv4FIO_oXvgSLM9VKm8EDqfzFEUby8mDQhWOnNwMhLk1bpmt7uxV6c7yKs6izuE4IMewWpo-n8PXeQmhg8ZHu1vV2rHwM_c5bxtzFnt8Zb9Dw8i74X8UghRAZVgIl5Mv0dJQPTQJFY1QkEQaeFs07hejtoIjEZugW4DyVI2IaRteMxvRsFtgEmyYgFYHgUNS6z8E6EfxF1UhA8bkMlvjPuBPmHynlZq7GM1eGKT9WZ7je2aLejlJyg7Y5r-IjUuFNRRRQk4lOgh1OvGoc6EBKvLJtEx8nBs4-OJddNo4q6EnHp7XiX_ELZ9NL8CAjCz2C5mAO0n5R3JUZroIsO_24yDs_5LGAfkoJLVznYUchIFVnQlrwhdVLSSSUSoRZOiB0uv4eGxMn2yHWGcnLctbloPsS2MRg3vCPEoWGbeyJXgZJeLbTSrKv2q4Kuouhevs0ZVqpeHbixCtLO67DF66ObW7wNGTk16uCjMy8Jf7KfWjvENh6t-pdG2_9pWNogG254HG-_02VGvZKPPkAcH5UxbRyWe7dpdW3q-coUXjOagP0gsV5JSjuIh9yS6eE1TqHwupqAwoSFAwMH9fFmF6_dhjS5NwgON9V9HZP4118iZ5_0qaTmfPd_oxKOFmy1o8fCpUalIZlRClgTRzPyb2TIRyzQ1109CCEwzPPW7K8oA5kek5XVFFGcTdg1PLk1w1fqY0DuVlunxL0mE0iw

publisherhttps://watermark.silverchair.com/evaa022.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAp8wggKbBgkqhkiG9w0BBwagggKMMIICiAIBADCCAoEGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMshplD_M3JeA3odIrAgEQgIICUk-RADWP7B0aOxNGc8HH-LmR85l_kuS46ec_MvQ1y9VbYvdn2hN5LKM5_Qe-LoJLoLLmXgo3Wv4FIO_oXvgSLM9VKm8EDqfzFEUby8mDQhWOnNwMhLk1bpmt7uxV6c7yKs6izuE4IMewWpo-n8PXeQmhg8ZHu1vV2rHwM_c5bxtzFnt8Zb9Dw8i74X8UghRAZVgIl5Mv0dJQPTQJFY1QkEQaeFs07hejtoIjEZugW4DyVI2IaRteMxvRsFtgEmyYgFYHgUNS6z8E6EfxF1UhA8bkMlvjPuBPmHynlZq7GM1eGKT9WZ7je2aLejlJyg7Y5r-IjUuFNRRRQk4lOgh1OvGoc6EBKvLJtEx8nBs4-OJddNo4q6EnHp7XiX_ELZ9NL8CAjCz2C5mAO0n5R3JUZroIsO_24yDs_5LGAfkoJLVznYUchIFVnQlrwhdVLSSSUSoRZOiB0uv4eGxMn2yHWGcnLctbloPsS2MRg3vCPEoWGbeyJXgZJeLbTSrKv2q4Kuouhevs0ZVqpeHbixCtLO67DF66ObW7wNGTk16uCjMy8Jf7KfWjvENh6t-pdG2_9pWNogG254HG-_02VGvZKPPkAcH5UxbRyWe7dpdW3q-coUXjOagP0gsV5JSjuIh9yS6eE1TqHwupqAwoSFAwMH9fFmF6_dhjS5NwgON9V9HZP4118iZ5_0qaTmfPd_oxKOFmy1o8fCpUalIZlRClgTRzPyb2TIRyzQ1109CCEwzPPW7K8oA5kek5XVFFGcTdg1PLk1w1fqY0DuVlunxL0mE0iw

publisherhttp://academic.oup.com/gbe/article-pdf/12/2/3977/32855669/evaa022.pdf

journalhttps://doi.org/10.1093/gbe/evaa022

repositoryhttps://pubmed.ncbi.nlm.nih.gov/32022857

Fields of Study

Genetic Mapping and Diversity in Plants and AnimalsGenetic diversity and population structureGene expression and cancer classification0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

Models, GeneticPhylogenyLikelihood FunctionsGenomeGenetic Speciation

Keywords

BiologyMaximum likelihoodPopulation structurePopulationGeneEvolutionary biologyEstimationPhylogeneticsGeneticsStatisticsDemographyStructureConsistencyDiscordanceTastiLikelihood FunctionsGenomeModels, GeneticGenetic SpeciationPhylogenyResearch Article

Sustainable Development Goals

SDG 2: 2. Zero hunger