Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome is a dataset published in Genome Biology and Evolution (2022). On theSindex it has a DataRank of 1.4, placing it in the top 14.8% of the data-sharing corpus. It has been cited 72 times, with 38 citing works in its 1-hop citation network. Its calibrated FAIR score is 38/100.
Ranks in the top 15% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The assembled numt sequence (from Col-CEN reads) along with 10 kb of flanking sequence on either side is available on GenBank under accession ON220560.”— not found in the paper; verdict downgraded
The paper provides a GenBank accession number, which is a persistent identifier scheme. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The assembled numt sequence (from Col-CEN reads) along with 10 kb of flanking sequence on either side is available on GenBank under accession ON220560.”— not found in the paper; verdict downgraded
GenBank is a named data repository. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The assembled numt sequence (from Col-CEN reads) along with 10 kb of flanking sequence on either side is available on GenBank under accession ON220560.”— not found in the paper; verdict downgraded
The dataset identifier appears only in the body text, not as a reference-list entry. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The assembled numt sequence (from Col-CEN reads) along with 10 kb of flanking sequence on either side is available on GenBank under accession ON220560.”— not found in the paper; verdict downgraded
The data-availability statement points to a repository record with an accession. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The assembled numt sequence... is 641 kb in length and has 99.933% nucleotide sequence identity with the actual mitochondrial genome.”— not found in the paper; verdict downgraded
The dataset is described in running prose, not in an itemised inventory. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The assembled numt sequence (from Col-CEN reads) along with 10 kb of flanking sequence on either side is available on GenBank under accession ON220560.”— not found in the paper; verdict downgraded
The paper gives an unconditional route to the data via GenBank with no stated precondition. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The assembled numt sequence (from Col-CEN reads) along with 10 kb of flanking sequence on either side is available on GenBank under accession ON220560.”— not found in the paper; verdict downgraded
The paper describes where to access the data but does not apply an explicit access-level label from the standard vocabulary. [downgraded to 'no' — no verifiable quote from the paper]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states when the data become available or how long they persist. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name a file format for the released data. [majority verdict 'no' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“accession number PRJEB46164”
The paper gives an identifier for the external PacBio HiFi reads used in the study. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is named for the data; the CC-BY licence applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the released dataset.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All scripts are available via https://github.com/dbsloan/arabidopsis_numt”
The paper gives a code-repository URL for the study's own scripts. [majority verdict 'yes' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R01 GM118046”
The paper states award numbers for the funding sources. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“We used the hifiasm v. 0.15.1-r334 assembler”
The paper names specific software and version tokens used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook) is mentioned as accompanying the deposited data, and no variable-definition table is provided inside the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.644
From this paper's citation signal
Citation Network Contribution
0.752
From 26 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 38 citers.
Biotechnology and Biological Sciences Research Council
Grant: BB/V003984/1
Assembling and recombining the Arabidopsis centromeres
NIGMS NIH HHS
Grant: R01 GM118046
National Institutes of Health
Grant: 1R01GM118046-01A1
Causes of Extreme Mitochondrial Mutation Rate Variation
FWCI
7.22
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Additional file 1 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 1 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 3 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 3 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 4 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 4 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 5 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 5 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 7 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 7 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 9 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 9 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 14 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 14 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 16 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 16 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 18 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 18 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 22 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis
Additional file 22 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis