Michael C. Schatz

Also affiliated with Johns Hopkins Medicine, Johns Hopkins University Applied Physics Laboratory

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

54.7Author DataRank

Indexed papers

27in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 27 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

Papers

Driven by 98 papers — median percentile 84. Top paper: “A robust benchmark for detection of germline large deletions and insertions”.

A robust benchmark for detection of germline large deletions and insertions

Nature Biotechnology(2020)10.1038/s41587-020-0538-8

N/A

10.3DataRank · unranked

486 citations

Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao +45 more

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

The complete sequence of a human genome

Science(2022)10.1126/science.abj6987

Top 3%

7.0DataRank

Top 3%3361 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +94 more

Complete genomic and epigenetic maps of human centromeres

Science(2022)10.1126/science.abl4178

Top 4%

5.0DataRank

Top 4%637 citations

Glennis A. Logsdon, Andrey V. Bzikadze, Pragya Sidhwani, Sasha A. Langley, Gina V. Caldas +54 more

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128

Top 4%

4.9DataRank

Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

A complete reference genome improves analysis of human genetic variation

Science(2022)10.1126/science.abl3533

Top 5%

4.4DataRank

Top 5%437 citations

Stephanie M. Yan, Daniela C. Soto, Melanie Kirsche, Samantha Zarate, Pavel Avdeyev +28 more

The complete sequence of a human Y chromosome

Nature(2023)10.1038/s41586-023-06457-y

Top 5%

4.1DataRank

Top 5%464 citations

Sergey Nurk, Mark J. P. Chaisson, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose +82 more

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Cell Genomics(2022)10.1016/j.xgen.2021.100085

N/A

3.9DataRank · unranked

132 citations

Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll +95 more

Epigenetic patterns in a complete human genome

Science(2022)10.1126/science.abj5089

Top 6%

3.9DataRank

Top 6%322 citations

Michael E.G. Sauria, Xavi Guitart, Mitchell R. Vollger, Paul W. Hook, Savannah J. Hoyt +15 more

Benchmarking challenging small variants with linked and long reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.212712

Top 11%

2.0DataRank

Top 11%60 citations

Nathan D. Olson, Lindsay Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek +37 more

A diploid assembly-based benchmark for variants in the major histocompatibility complex

Nature Communications(2020)10.1038/s41467-020-18564-9

Top 11%

2.0DataRank

Top 11%102 citations

Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan +21 more

High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

Genome Research(2024)10.1101/gr.279273.124

Top 13%

1.7DataRank

Top 13%78 citations

Sophia B Gibson, Nikhita Damaraju, Miranda Pg Zalusky, Kendra Hoekzema, David Twesigomwe +42 more

Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome

Genome Biology and Evolution(2022)10.1093/gbe/evac059

Top 15%

1.4DataRank

Top 15%72 citations

Gus Waneka, Matthew Naish, Michael C. Schatz, Ian R. Henderson, Daniel B. Sloan +1 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3

Top 16%

1.3DataRank

Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Differences in activity and stability drive transposable element variation in tropical and temperate maize

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.09.511471

Top 17%

1.2DataRank

Top 17%39 citations

Tyler Collins, Yinjie Qiu, Arun S. Seetharam, Claire C. Menard, Nancy Manchanda +6 more

Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats

Genome Biology and Evolution(2023)10.1093/gbe/evad148

N/A

1.2DataRank · unranked

53 citations

O. Ramos, Melissa Kramer, Sara Goodwin, Sara J. Oppenheim, Daniel J. Becker +5 more

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

Nature Communications(2020)10.1038/s41467-020-14998-3

N/A

1.2DataRank · unranked

2468 citations

Kamil S. Jaroň, Michael C. Schatz, T. Rhyker Ranallo-Benavidez

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Nature Biotechnology(2024)10.1038/s41587-023-02100-3

N/A

1.2DataRank · unranked

69 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +36 more

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology(2019)10.1038/s41587-019-0217-9

N/A

1.1DataRank · unranked

1912 citations

Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard J. Hall, Gregory T. Concepcion +24 more

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Nucleic Acids Research(2022)10.1093/nar/gkac247

N/A

1.1DataRank · unranked

1384 citations

Enis Afgan, Anton Nekrutenko, Björn Grüning, Daniel Blankenberg, Jeremy Goecks +89 more

Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato

Cell(2020)10.1016/j.cell.2020.05.021

N/A

1.0DataRank · unranked

858 citations

Xingang Wang, Matthias Benoit, Sebastian Soyk, Lara Pereira, Lei Zhang +30 more

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

Genome Research(2024)10.1101/gr.279334.124

N/A

0.966DataRank · unranked

34 citations

Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M. Jenike +22 more

The complete sequence of a human Y chromosome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518724

Top 22%

0.934DataRank

Top 22%42 citations

Sergey Nurk, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook +79 more

Complete genomic and epigenetic maps of human centromeres

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.12.452052

Top 22%

0.911DataRank

Top 22%17 citations

Glennis A. Logsdon, Andrey V. Bzikadze, Pragya Sidhwani, Sasha A. Langley, Gina V. Caldas +53 more

Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References

Annual Review of Genomics and Human Genetics(2024)10.1146/annurev-genom-021623-081639

Top 23%

0.864DataRank

Top 23%42 citations

Jordan M. Eizenga, Qiuhui Li, Arun Das, Katharine M. Jenike, Eimear E. Kenny +6 more

SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans

eLife(2021)10.7554/elife.60681

N/A

0.764DataRank · unranked

19 citations

Rebecca J. Tay, Margaret R. Starostik, Suhua Feng, James J. Moresco, Brooke E. E. Montgomery +8 more

Characterization of large-scale genomic differences in the first complete human genome

Genome biology(2023)10.1186/s13059-023-02995-w

Top 26%

0.760DataRank

Top 26%24 citations

Xuankai Wang, Yawen Zou, Shilong Zhang, Manying Xia, Lianting Fu +14 more

Third-generation sequencing and the future of genomics

10.1101/048603

N/A

0.747DataRank · unranked

144 citations

James Gurtowski, Shinjae Yoo, Maria Nattestad, Shoshana Marcus, Sara Goodwin +3 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

A complete diploid human genome benchmark for personalized genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677443

Top 32%

0.611DataRank

Top 32%23 citations

Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Glennis A. Logsdon +60 more

Pan-genomic matching statistics for targeted nanopore sequencing

iScience(2021)10.1016/j.isci.2021.102696

N/A

0.598DataRank · unranked

53 citations

Massimiliano Rossi, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher +2 more

Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment

Nature Methods(2025)10.1038/s41592-025-02631-4

N/A

0.587DataRank · unranked

49 citations

Paul W. Hook, Katharine M. Jenike, Vikram S. Shivakumar, Luke B Morina, Roham Razaghi +3 more

Complete sequencing of ape genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.605654

Top 34%

0.582DataRank

Top 34%26 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication

Nature Communications(2024)10.1038/s41467-024-55195-w

N/A

0.557DataRank · unranked

15 citations

Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Srividya Ramakrishnan +17 more

Vargas: heuristic-free alignment for assessing linear and graph read aligners

Bioinformatics(2020)10.1093/bioinformatics/btaa265

N/A

0.529DataRank · unranked

33 citations

Ravi Gaddipati, Michael C. Schatz, Ben Langmead, Charlotte A. Darby

The rise of a digital immune system

GigaScience(2012)10.1186/2047-217x-1-4

N/A

0.510DataRank · unranked

29 citations

Adam M. Phillippy, Michael C. Schatz

Population-scale variability at short tandem repeat loci reveals pathogenicity signature

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.06.631535

Top 41%

0.461DataRank

Top 41%11 citations

Isaac Xu, Sarah Fazal, Egor Dolzhenko, David Pellerin, Ben Weisburd +30 more

Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease

Genome Research(2025)10.1101/gr.279323.124

N/A

0.425DataRank · unranked

11 citations

Bohan Ni, Chloe Reuter, John E. Gorzynski, Sarah Fazal, Devon Bonner +13 more

Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region

medRxiv(2020)10.1101/2020.08.13.20174136

N/A

0.416DataRank · unranked

15 citations

Shirlee Wohl, Thomas Mehoke, Srividya Ramakrishnan, Melanie Kirsche, Oluwaseun Falade‐Nwulia +17 more

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

Genome Research(2024)10.1101/gr.277950.123

N/A

0.404DataRank · unranked

9 citations

Xi He, Belinda Giardine, Kathryn J. Isaac, Dylan J. Taylor, Rajiv C. McCoy +29 more

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546576

N/A

0.373DataRank · unranked

11 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +32 more

Unraveling the hidden complexity of cancer through long-read sequencing

Genome Research(2025)10.1101/gr.280041.124

N/A

0.360DataRank · unranked

10 citations

Ayse G. Keskus, Justin Wagner, Michal Izydorczyk, Winston Timp, Fritz J. Sedlazeck +5 more

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.02.535219

N/A

0.241DataRank · unranked

4 citations

Xi He, Belinda Giardine, Kathryn J. Isaac, Dylan J. Taylor, Rajiv C. McCoy +29 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

Complete sequence of a 641-kb insertion of mitochondrial DNA in the Arabidopsis thaliana nuclear genome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.22.481460

Top 65%

0.208DataRank

Top 65%3 citations

Gus Waneka, Matthew Naish, Michael C. Schatz, Ian R. Henderson, Daniel B. Sloan +1 more

Mem-based pangenome indexing for k-mer queries

Algorithms for Molecular Biology(2025)10.1186/s13015-025-00272-y

N/A

0.104DataRank · unranked

1 citations

Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz +2 more

Sketching and sampling approaches for fast and accurate long read classification

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.04.467374

N/A

0DataRank · unranked

0 citations

Michael C. Schatz, Arun Das

Random Forest Factorization Reveals Latent Structure in Single Cell RNA Sequencing Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.13.460168

N/A

0DataRank · unranked

0 citations

Benjamin D. Shapiro, Michael C. Schatz, Alexis Battle, Boris Brenerman

Sketching and sampling approaches for fast and accurate long read classification

BMC Bioinformatics(2022)10.1186/s12859-022-05014-0

N/A

0DataRank · unranked

4 citations

Michael C. Schatz, Arun Das

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.17.435706

N/A

0DataRank · unranked

0 citations

Dannon Baker, Marius van den Beek, Bjoern Gruening, Dave Bouvier, Nate Coraor +5 more

De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays

Molecular Microbiology(2020)10.1111/mmi.14488

N/A

0DataRank · unranked

53 citations

Brian Green, Nicole Benoit, Michael C. Schatz, Sarah J. Wheelan, Brendan P. Cormack +1 more

Jasmine and Iris: population-scale structural variant comparison and analysis

Nature Methods(2023)10.1038/s41592-022-01753-3

N/A

0DataRank · unranked

167 citations

Gautam Prabhu, Rachel M. Sherman, Bohan Ni, Alexis Battle, Sergey Aganezov +2 more

Local adaptation and archaic introgression shape global diversity at human structural variant loci

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.26.428314

N/A

0DataRank · unranked

2 citations

Rachel M. Sherman, Dylan J. Taylor, Divya R. Nair, Andrew N. Bortvin, Michael C. Schatz +2 more

Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing

Nature Methods(2023)10.1038/s41592-022-01716-8

N/A

0DataRank · unranked

78 citations

Shujun Ou, Katharine M. Jenike, Michael C. Schatz, Sam Kovaka

Optimized sample selection for cost-efficient long-read population sequencing

Genome Research(2021)10.1101/gr.264879.120

N/A

0DataRank · unranked

9 citations

Zachary H. Lemmon, Sebastian Soyk, Sergey Aganezov, William Salerno, Rajiv C. McCoy +4 more

The genomic basis of evolutionary differentiation among honey bees

Genome Research(2021)10.1101/gr.272310.120

N/A

0DataRank · unranked

35 citations

Philipp Brand, Hung N. Nguyen, Jacob Herman, Francisco Câmara Ferreira, Daniel Ence +18 more

Concerning the eXclusion in human genomics: the choice of sex chromosome representation in the human genome drastically affects the number of identified variants

G3 Genes Genomes Genetics(2023)10.1093/g3journal/jkad169

N/A

0DataRank · unranked

16 citations

Brian D. O’Connor, Michael C. Schatz, Samantha Zarate, Melissa A. Wilson, Brendan J. Pinto

Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids

JAC-Antimicrobial Resistance(2023)10.1093/jacamr/dlad061

N/A

0DataRank · unranked

4 citations

Yehudit Bergman, Yunfan Fan, Emily Jacobs, Srividya Ramakrishnan, Jennifer Lu +7 more

Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

BMC Bioinformatics(2023)10.1186/s12859-023-05389-8

N/A

0DataRank · unranked

2 citations

Dannon Baker, Marius van den Beek, Bjoern Gruening, Dave Bouvier, Nate Coraor +5 more

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569198

N/A

0DataRank · unranked

24 citations

Brandon D. Pickett, Robert S. Harris, Gabrielle A. Hartley, Monika Čechová, Karol Pal +78 more

Jasmine: Population-scale structural variant comparison and analysis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.27.445886

N/A

0DataRank · unranked

36 citations

G. G. Prabhu, Rachel M. Sherman, Bohan Ni, Sergey Aganezov, Michael C. Schatz +1 more

Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.18.469135

N/A

0DataRank · unranked

106 citations

Ludivine Lebeigle, Melanie Kirsche, Sergey Aganezov, Xingang Wang, Zachary B. Lippman +3 more

Concerning the eXclusion in human genomics: The choice of sex chromosome representation in the human genome drastically affects number of identified variants

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.22.529542

N/A

0DataRank · unranked

2 citations

Brian D. O’Connor, Michael C. Schatz, Samantha Zarate, Melissa A. Wilson, Brendan J. Pinto

BEATRICE: Bayesian Fine-mapping from Summary Data using Deep Variational Inference

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.24.534116

N/A

0DataRank · unranked

1 citations

Michael C. Schatz, Archana Venkataraman, Sayan Ghosal

The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.24.554647

Top 100%

0DataRank

Top 100%0 citations

Srividya Ramakrishnan, Cristiane de Santis Alves, Laís Araujo Coelho, Melissa Kramer, Sara Goodwin +25 more

Utility of long-read sequencing for All of Us

Nature Communications(2024)10.1038/s41467-024-44804-3

N/A

0DataRank · unranked

106 citations

Yongqing Huang, Kiran Garimella, Peter A. Audano, W. Wan, Nripesh Prasad +9 more

Convergent evolution of plant prickles by repeated gene co-option over deep time

Science(2024)10.1126/science.ado1663

N/A

0DataRank · unranked

69 citations

David Alonso, Pietro Gramazio, Katharine M. Jenike, Jia He, Andrea Arrones +34 more

High resolution copy number inference in cancer using short-molecule nanopore sequencing

Nucleic Acids Research(2021)10.1093/nar/gkab812

N/A

0DataRank · unranked

24 citations

Sam Kovaka, Fritz J. Sedlazeck, Yanming Zhang, Robert Wappel, Sha Tian +4 more

ModDotPlot—rapid and interactive visualization of tandem repeats

Bioinformatics(2024)10.1093/bioinformatics/btae493

N/A

0DataRank · unranked

54 citations

Michael C. Schatz, Adam M. Phillippy, Alexander P. Sweeten

Cell wall protein variation, break‐induced replication, and subtelomere dynamics in Candida glabrata

Molecular Microbiology(2021)10.1111/mmi.14707

N/A

0DataRank · unranked

31 citations

Brian Green, Nicole Benoit, Jack D. Sobel, Michael C. Schatz, Sarah J. Wheelan +2 more

Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area

JCI Insight(2021)10.1172/jci.insight.144350

N/A

0DataRank · unranked

41 citations

Shirlee Wohl, Thomas Mehoke, Srividya Ramakrishnan, Melanie Kirsche, Oluwaseun Falade‐Nwulia +17 more

BEATRICE: Bayesian fine-mapping from summary data using deep variational inference

Bioinformatics(2024)10.1093/bioinformatics/btae590

N/A

0DataRank · unranked

4 citations

Michael C. Schatz, Archana Venkataraman, Sayan Ghosal

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor

PLoS Pathogens(2021)10.1371/journal.ppat.1009537

N/A

0DataRank · unranked

50 citations

Christine M. Bassis, Srividya Ramakrishnan, Robert Hein, Sophia Mason, Yehudit Bergman +9 more

Local adaptation and archaic introgression shape global diversity at human structural variant loci

eLife(2021)10.7554/elife.67615

N/A

0DataRank · unranked

55 citations

Rachel M. Sherman, Dylan J. Taylor, Divya R. Nair, Andrew N. Bortvin, Michael C. Schatz +2 more

Differences in activity and stability drive transposable element variation in tropical and temperate maize

Genome Research(2024)10.1101/gr.278131.123

N/A

0DataRank · unranked

46 citations

Armin Scheben, Tyler Collins, Yinjie Qiu, Arun S. Seetharam, Claire C. Menard +7 more

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.15.585294

N/A

0DataRank · unranked

20 citations

Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M. Jenike +18 more

Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.05.583511

N/A

0DataRank · unranked

17 citations

Paul W. Hook, Katharine M. Jenike, Vikram S. Shivakumar, Luke B Morina, Roham Razaghi +3 more

The genetic and epigenetic landscape of the Arabidopsis centromeres

Science(2021)10.1126/science.abi7489

N/A

0DataRank · unranked

476 citations

Michael Alonge, Piotr Włodzimierz, Andrew J. Tock, Bradley W. Abramson, Anna Schmücker +19 more

ModDotPlot - Rapid and interactive visualization of complex repeats

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.15.589623

N/A

0DataRank · unranked

8 citations

Michael C. Schatz, Adam M. Phillippy, Alexander P. Sweeten

Convergent evolution of plant prickles is driven by repeated gene co-option over deep time

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.21.581474

N/A

0DataRank · unranked

5 citations

David Alonso, Pietro Gramazio, Katharine M. Jenike, Jia He, Andrea Arrones +33 more

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.22.581585

N/A

0DataRank · unranked

5 citations

Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Srividya Ramakrishnan +15 more

Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease

medRxiv(2024)10.1101/2024.03.22.24304565

N/A

0DataRank · unranked

5 citations

Bohan Ni, Chloe Reuter, John E. Gorzynski, Sarah Fazal, Devon Bonner +13 more

Comparative genomics of the sexually transmitted parasite Trichomonas vaginalis reveals relaxed and convergent evolution and genes involved in spillover from birds to humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.22.629724

N/A

0DataRank · unranked

2 citations

Jordan C. Orosco, Francisco Callejas‐Hernández, Frances Blow, Hayan Lee, T. Rhyker Ranallo-Benavidez +21 more

Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.23.629682

N/A

0DataRank · unranked

2 citations

Nikolaos Pechlivanis, Nikolaos Strepis, Pierre Amato, Matthias Bernt, Anshu Bhardwaj +31 more

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bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.20.595044

N/A

0DataRank · unranked

0 citations

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UNC Libraries(2024)10.17615/zsg3-yd09

N/A

0DataRank · unranked

0 citations

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.26.963322

N/A

0DataRank · unranked

1 citations

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Nature Communications(2025)10.1038/s41467-025-61483-w

N/A

0DataRank · unranked

3 citations

Jordan C. Orosco, Francisco Callejas‐Hernández, Frances Blow, Hayan Lee, T. Rhyker Ranallo-Benavidez +22 more

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.06.240390

N/A

0DataRank · unranked

3 citations

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High resolution copy number inference in cancer using short-molecule nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.28.424602

N/A

0DataRank · unranked

8 citations

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Genome Research(2020)10.1101/gr.260497.119

N/A

0DataRank · unranked

110 citations

Sara Goodwin, Rachel M. Sherman, Fritz J. Sedlazeck, Gayatri Arun, Sonam Bhatia +10 more

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.03.931923

N/A

0DataRank · unranked

51 citations

Yunfan Fan, Bohan Ni, Winston Timp, Michael C. Schatz, Sam Kovaka

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Lecture notes in computer science(2025)10.1007/978-3-032-05141-7_34

N/A

0DataRank · unranked

0 citations

Zachary Jacokes, John Darrell Van Horn, Michael C. Schatz, Kevin A. Pelphrey, Archana Venkataraman +1 more

Insights into the Datasets, Tools, and Training Needs of the AnVIL Community: 2024

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.14.688517

N/A

0DataRank · unranked

0 citations

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A master regulator of regeneration

Science(2019)10.1126/science.aaw6258

N/A

0DataRank · unranked

0 citations

Michael C. Schatz, Michael Alonge

Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing

Genome biology(2022)10.1186/s13059-022-02823-7

N/A

0DataRank · unranked

960 citations

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From telomere to telomere: The transcriptional and epigenetic state of human repeat elements

Science(2022)10.1126/science.abk3112

N/A

0DataRank · unranked

408 citations

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