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DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum

Nucleic Acids Research(2024)10.1093/nar/gkae585Source: DataRank Database

DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum is a research paper published in Nucleic Acids Research (2024). On theSindex it has a DataRank of 0.467. It has been cited 16 times, with 10 citing works in its 1-hop citation network.

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0.467DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access16 citations · 10 citing works in its network

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Data availability

Repositories this paper deposited data in (declared in PubMed).

GEOGSE227873 GSE212052
SRAPRJNA873081

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (14 grants)OA: goldTopics (30)IDs (PubMed, PMC)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 91%Citation Network 9%

Base Score Contribution

0.425

From this paper's citation signal

Citation Network Contribution

0.0420

From 5 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 10 citers.

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bioRxiv (Cold Spring Harbor Laboratory)20241 citations60 referencesContributes 0.012
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Cancer Medicine20259 citations225 referencesContributes 0.010
Integration of ATAC-seq and RNA-seq reveals temperature-responsive regulatory regions in Plasmodium falciparum asexual stages
Parasites & Vectors20261 citations69 referencesContributes 0.010
Sequence-Dependent Shape and Stiffness of DNA and RNA Double Helices: Hexanucleotide Scale and Beyond
Journal of Chemical Information and Modeling20254 citations166 referencesContributes 0.010
Plasmodium telomere maintenance: uncovering the Achilles’ heel for novel antimalarials
Frontiers in Cellular and Infection Microbiology20251 citations88 referencesContributes 0.008

Authors (10)

Yuning Zhang ORCID,Alan S. Brown ORCID,J.R. Horton ORCID,Gabrielle A. Josling ORCID,Tsu-Pei Chiu ORCID

Live enrichment

PubMed:38966997 PMC:PMC11417369

National Institutes of Health

Grant: R01-AI125565

National Institutes of Health

Grant: T32-GM125592

National Institutes of Health

Grant: R35-GM130376

National Institutes of Health

Grant: R35-GM144135

National Science Foundation

Grant: MCB-1715589

NIGMS NIH HHS

Grant: R35 GM144135

NIGMS NIH HHS

Grant: R35 GM130376

NIAID NIH HHS

Grant: R01 AI125565

NIGMS NIH HHS

Grant: T32 GM125592

National Institutes of Health

Grant: 5R01AI125565-02

Dissecting the role of ApiAP2 proteins in transcriptional regulation during Plasmodium falciparum development

National Institutes of Health

Grant: 5R35GM144135-03

Understanding the predeterminants of transcription factor regulatory activity

National Science Foundation

Grant: 1715589

Differential effects of genomic context on the binding specificity of paralogous transcription factors

National Institutes of Health

Grant: 5T32GM125592-04

Eukaryotic Gene Regulation (EGR) Predoctoral Training Program

National Institutes of Health

Grant: 5R35GM130376-03

Quantitative Modeling of Transcription Factor-DNA Binding

goldLicense: CC BY

publisherhttps://academic.oup.com/nar/article-pdf/52/17/10161/59209548/gkae585.pdf

Unpaywallhttps://doi.org/10.1093/nar/gkae585

Europe_PMChttps://europepmc.org/articles/PMC11417369

Europe_PMChttps://europepmc.org/articles/PMC11417369?pdf=render

https://pubmed.ncbi.nlm.nih.gov/38966997

Fields of Study

0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

ChromatinHumansPlasmodium falciparumMalaria, FalciparumProtozoan ProteinsTranscription FactorsDNADNA, ProtozoanEpigenesis, GeneticBinding SitesBase SequenceProtein BindingNucleotide Motifs

Keywords

Binding SitesBase SequenceGene regulation, Chromatin and EpigeneticsPlasmodium falciparumProtozoan ProteinsDNADNA, ProtozoanChromatinEpigenesis, GeneticHumansNucleotide MotifsMalaria, FalciparumTranscription FactorsProtein Binding

Related Papers (1)

Glucose starvation induces a switch in the histone acetylome for activation of gluconeogenic and fat metabolism genes

N/A

2.8DataRank · unranked

Molecular Cell(2022)

co-cited

10.1016/j.molcel.2021.12.015

DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (10)

Funding (14 grants)

Open Access

Topics

Annotations (Europe PMC)

Related Papers (1)