VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers is a dataset published in Nucleic Acids Research (2024). On theSindex it has a DataRank of 0.766, placing it in the top 26.3% of the data-sharing corpus. It has been cited 45 times, with 36 citing works in its 1-hop citation network. Its calibrated FAIR score is 15/100.
Ranks in the top 26% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All data is available on enhancer.lbl.gov and on gitlab.com/egsb-mfgl/vista-data”— not found in the paper; verdict downgraded
The paper provides URLs for the data, not a persistent identifier. [downgraded to 'no' — no verifiable quote from the paper]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“All data is available on enhancer.lbl.gov and on gitlab.com/egsb-mfgl/vista-data”— not found in the paper; verdict downgraded
The data is hosted on a lab website and GitLab, not a dedicated data repository. [downgraded to 'no' — no verifiable quote from the paper]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“All data is available on enhancer.lbl.gov and on gitlab.com/egsb-mfgl/vista-data”— not found in the paper; verdict downgraded
The dataset's location is given in the body text, not as a reference entry. [downgraded to 'no' — no verifiable quote from the paper]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All data is available on enhancer.lbl.gov and on gitlab.com/egsb-mfgl/vista-data”— not found in the paper; verdict downgraded
The statement points to a website and a GitLab repository, not to a repository record with a persistent identifier or accession. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“As of August 2024, the database contained data from over 4500 experiments, including over 23 500 images of over 13 500 transgenic embryos.”
The paper describes the dataset's contents in running prose, not an itemised inventory.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All data is available on enhancer.lbl.gov and on gitlab.com/egsb-mfgl/vista-data”— not found in the paper; verdict downgraded
The data is stated to be available without any precondition. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“All data is available on enhancer.lbl.gov and on gitlab.com/egsb-mfgl/vista-data”— not found in the paper; verdict downgraded
The paper describes the access action (available on website) but does not label the access level. [downgraded to 'no' — no verifiable quote from the paper]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data is not sensitive; no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No persistence commitment or availability timing is stated.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community standard is named.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“genomic assembly (hg38 for human loci, mm10 for mouse loci)”— not found in the paper; verdict downgraded
The paper provides genome assembly identifiers (hg38, mm10) for external resources. [downgraded to 'no' — no verifiable quote from the paper]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is named for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“As of August 2024, the database contained data from over 4500 experiments”
The paper gives a date snapshot (August 2024) but no version token.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No locator for the code is given.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Institutes of Health [R01HG003988 to L.A.P.]”
The paper provides award numbers.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Recent advancements in transgenic assay technology using CRISPR/Cas9 to direct the integration of transgenic construct to a safe harbor locus (enSERT method)”— not found in the paper; verdict downgraded
The paper names specific methods and reagents used to produce the data. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The data model of the updated VISTA Enhancer Browser database encompasses a hierarchical, one-to-many structure consisting of loci, elements, experiments, and embryos (Figure 1)”— not found in the paper; verdict downgraded
The data model is described inside the article, not in a separate documentation object. [downgraded to 'no' — no verifiable quote from the paper]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.574
From this paper's citation signal
Citation Network Contribution
0.192
From 18 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 36 citers.
National Institutes of Health
Grant: R01HG003988
Department of Energy
Grant: DE-AC02-05CH11231
Greece 2.0, National Recovery and Resilience Plan
Grant: TAEDR-0539180
National Institutes of Health
Grant: 5R01HG003988-16
Functionally Assessing Transcriptional Enhancers In Vivo
HFRI
Grant: unidentified
unidentified
Hellenic Foundation for Research and Innovation
Greece 2.0 - Basic Research Financing Action
16718-PRPFOR
Fondation Santé
Onassis Foundation
Hellenic Foundation for Research and Innovation
Fondation Santé
Onassis Foundation
16718-PRPFOR
Greece 2.0 - Basic Research Financing Action
Fields of Study
MeSH Terms
Keywords