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Shiba: a versatile computational method for systematic identification of differential RNA splicing across platforms

Nucleic Acids Research(2025)10.1093/nar/gkaf098Source: DataRank Database

Shiba: a versatile computational method for systematic identification of differential RNA splicing across platforms is a research paper published in Nucleic Acids Research (2025). On theSindex it has a DataRank of 0. It has been cited 10 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access10 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (5 grants)Impact (FWCI 4.18)OA: goldTopics (29)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (3)

Liang Chen ORCID,Sika Zheng ORCID,Naoto Kubota ORCID

Live enrichment

PubMed:39997221 PMC:PMC11851117 OpenAlex:https://openalex.org/W4407921163

National Institutes of Health

Grant: R01NS15276

National Institutes of Health

Grant: R01GM137428

NINDS NIH HHS

Grant: R01 NS125276

NINDS NIH HHS

Grant: R01 NS139485

Uehara Memorial Foundation Postdoctoral Fellowship

FWCI

4.18

Citation Percentile

0.9%

Citation Trend

2025

2026

goldLicense: cc-by-nc

journalhttps://doi.org/10.1093/nar/gkaf098

publisherhttps://doi.org/10.1093/nar/gkaf098

publisherhttps://academic.oup.com/nar/article-pdf/53/4/gkaf098/62165578/gkaf098.pdf

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39997221

repositoryhttps://escholarship.org/uc/item/0sm5691q

Fields of Study

RNA Research and SplicingSingle-cell and spatial transcriptomicsRNA modifications and cancer

MeSH Terms

RNA-SeqAnimalsHumansRNA PrecursorsRNA SplicingSoftwareReproducibility of ResultsAlternative SplicingSequence Analysis, RNAComputational BiologyMiceSingle-Cell AnalysisDopaminergic Neurons

Keywords

BiologyRNA splicingComputational biologyFalse positive paradoxAlternative splicingRNAIdentification (biology)Pipeline (software)Computer scienceMessenger RNAGeneGeneticsMachine learning