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In silico λ-dynamics predicts protein binding specificities to modified RNAs

Nucleic Acids Research(2025)10.1093/nar/gkaf166Source: DataRank Database

In silico λ-dynamics predicts protein binding specificities to modified RNAs is a research paper published in Nucleic Acids Research (2025). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Open Access1 citations

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Enrichment:Funding (12 grants)Impact (FWCI 0.41)OA: goldTopics (51)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Wen Zhang ORCID,Jonah Z. Vilseck ORCID,Scott Takeo Aoki ORCID,Murphy Angelo

Live enrichment

PubMed:40066880 PMC:PMC11894534 OpenAlex:https://openalex.org/W4408300905

National Institute of General Medical Sciences

Grant: R35GM142691

National Institute of General Medical Sciences

Grant: R35GM146888

Basic Energy Sciences

Grant: DE-AC02-06CH11357

NCI NIH HHS

Grant: P30 CA082709

National Institutes of Health

Grant: 5R35GM142691-02

Biochemistry in situ to determine inheritance of RNA-protein complexes

National Institutes of Health

Grant: 5R35GM146888-03

Tackling Multifaceted Drug Design Problems with Lambda Dynamics Based Technologies

NIGMS

NIH

School of Medicine, Indiana University

NIGMS

NIH

School of Medicine, Indiana University

FWCI

0.41

Citation Percentile

0.6%

Citation Trend

2026

goldLicense: cc-by-nc

journalhttps://academic.oup.com/nar/article-pdf/53/5/gkaf166/62373321/gkaf166.pdf

publisherhttps://academic.oup.com/nar/article-pdf/53/5/gkaf166/62373321/gkaf166.pdf

journalhttps://doi.org/10.1093/nar/gkaf166

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40066880

repositoryhttps://hdl.handle.net/1805/47106

Fields of Study

RNA modifications and cancerRNA and protein synthesis mechanismsRNA Research and Splicing0206 medical engineering02 engineering and technologyRNAAdenosineProtein BindingInosineThermodynamicsBinding SitesAntibodiesComputer SimulationRNA Processing, Post-Transcriptional

MeSH Terms

AdenosineAntibodiesAntibody SpecificityBinding SitesComputer SimulationInosineProtein BindingRNARNA Processing, Post-TranscriptionalThermodynamicsMolecular Dynamics Simulation

Keywords

In silicoRNABiologyComputational biologyRNA-binding proteinBinding siteNucleic acid structureMessenger RNAInosineBiochemistryGeneEnzymeIn silico modelingAdenosineBinding SitesRNA-protein interactionsMolecular dynamicsArticleAntibodiesLambda-dynamicsRNA modificationsMethodsThermodynamicsComputer SimulationRNA Processing, Post-TranscriptionalProtein Binding

Sustainable Development Goals

SDG 0: Affordable and clean energy

In silico λ-dynamics predicts protein binding specificities to modified RNAs

FAIR Checklist

Authors (4)

Funding (12 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)