Jonah Z. Vilseck

Institut thématique Génétique, génomique et bioinformatique

Also affiliated with University School, Indiana University School of Medicine, Indiana University – Purdue University Indianapolis, Indiana University

Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyComputer ScienceChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome”.

Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome

Journal of Biological Chemistry(2020)10.1074/jbc.ra120.014576

N/A

0.995DataRank · unranked

34 citations

Monica P. Barron, Guihong Qi, H. R. Sagara Wijeratne, José Victorino, Edward Simpson +4 more

Chemically induced partial unfolding of the multifunctional apurinic/apyrimidinic endonuclease 1

Protein Science(2025)10.1002/pro.70148

N/A

0.269DataRank · unranked

5 citations

Olabode Dawodu, Jingwei Meng, Steven M. Johnson, Jonah Z. Vilseck, Mark R. Kelley +3 more

Chemically induced partial unfolding of the multifunctional Apurinic/apyrimidinic endonuclease 1

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.29.547112

N/A

0.241DataRank · unranked

4 citations

Olabode Dawodu, Jingwei Meng, Steven M. Johnson, Jonah Z. Vilseck, Mark R. Kelley +3 more

Gas-Phase Ion/Ion Chemistry for Structurally Sensitive Probes of Gaseous Protein Ion Structure: Electrostatic and Electrostatic to Covalent Cross-Linking

ChemRxiv(2020)10.26434/chemrxiv.13171754.v1

N/A

0.165DataRank · unranked

2 citations

Verônica V. Carvalho, Jonah Z. Vilseck, Ian Webb, Melanie Cheung See Kit

Gas-Phase Ion/Ion Chemistry for Structurally Sensitive Probes of Gaseous Protein Ion Structure: Electrostatic and Electrostatic to Covalent Cross-Linking

ChemRxiv(2021)10.26434/chemrxiv.13171754.v2

N/A

0.165DataRank · unranked

2 citations

Verônica V. Carvalho, Jonah Z. Vilseck, Ian Webb, Melanie Cheung See Kit

Gas-Phase Ion/Ion Chemistry for Structurally Sensitive Probes of Gaseous Protein Ion Structure: Electrostatic and Electrostatic to Covalent Cross-Linking

ChemRxiv(2020)10.26434/chemrxiv.13171754

N/A

0.104DataRank · unranked

1 citations

Verônica V. Carvalho, Jonah Z. Vilseck, Ian Webb, Melanie Cheung See Kit

Quantifying the Structural and Energetic Consequences of EXOSC3 S1 Domain Variants from a Comparative Assessment of λ-Dynamics with Two Charge-Changing Perturbation Strategies

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.30.662390

N/A

0.104DataRank · unranked

1 citations

H. R. Sagara Wijeratne, Avery M. Runnebohm, Katelyn M. Caric, Amber L. Mosley, Jonah Z. Vilseck +1 more

Substrate selectivity of the PRDM9 lysine methyltransferase domain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.12.511945

N/A

0DataRank · unranked

0 citations

Kenidi Sanders, Christine A. Berryhill, Firoj K. Sahoo, Andy Hudmon, Jonah Z. Vilseck +2 more

Fast free energy estimates from λ-dynamics with bias-updated Gibbs sampling

Nature Communications(2023)10.1038/s41467-023-44208-9

N/A

0DataRank · unranked

26 citations

Ryan L. Hayes, Xinqiang Ding, Brian Pulawski, Jonah Z. Vilseck, Michael T. Robo

Identification of nonhistone substrates of the lysine methyltransferase PRDM9

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.104651

N/A

0DataRank · unranked

15 citations

Kenidi Sanders, Christine A. Berryhill, Firoj K. Sahoo, Andy Hudmon, Jonah Z. Vilseck +2 more

A λ-dynamics investigation of insulin Wakayama and other A3 variant binding affinities to the insulin receptor

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.15.585233

N/A

0DataRank · unranked

0 citations

Jonah Z. Vilseck, Monica P. Barron

Accurate in silico predictions of modified RNA interactions to a prototypical RNA-binding protein with λ-dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627848

N/A

0DataRank · unranked

0 citations

Yash Bhargava, Elzbieta Kierzek, Ryszard Kierzek, Ryan L. Hayes, Wen Zhang +3 more

The absence of Peroxiredoxin-1 in human pancreatic ductal adenocarcinoma (PDAC) markedly reduces cell survival and tumor growth when coupled with the inhibition of Ref-1 redox signaling

Redox Biology(2025)10.1016/j.redox.2025.103848

N/A

0DataRank · unranked

3 citations

Randall Wireman, Jacqueline Peil, Dana K. Mitchell, Elizabeth A. Sierra Potchanant, Ratan Kumar +7 more

In silico λ-dynamics predicts protein binding specificities to modified RNAs

Nucleic Acids Research(2025)10.1093/nar/gkaf166

N/A

0DataRank · unranked

1 citations

Wen Zhang, Jonah Z. Vilseck, Scott Takeo Aoki, Murphy Angelo

Multiple Molecule λ-Dynamics: Probing Drug Resistance with Concurrent Protein and Ligand Perturbations

ChemRxiv(2025)10.26434/chemrxiv-2025-m0129

N/A

0DataRank · unranked

0 citations

Ryan L. Hayes, Charles L. Brooks, Jonah Z. Vilseck, Michael P. Liesen

Gas-phase ion/ion chemistry for structurally sensitive probes of gaseous protein ion structure: Electrostatic and electrostatic to covalent cross-linking

International Journal of Mass Spectrometry(2021)10.1016/j.ijms.2021.116549

N/A

0DataRank · unranked

17 citations

Verônica V. Carvalho, Jonah Z. Vilseck, Ian Webb, Melanie Cheung See Kit

Generalizing the Discrete Gibbs Sampler-Based λ-Dynamics Approach for Multisite Sampling of Many Ligands

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.1c00176

N/A

0DataRank · unranked

15 citations

Xinqiang Ding, Ryan L. Hayes, Charles L. Brooks, Jonah Z. Vilseck

Optimizing Multisite λ-Dynamics Throughput with Charge Renormalization

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.2c00047

N/A

0DataRank · unranked

16 citations

Luis F. Cervantes, Ryan L. Hayes, Charles L. Brooks, Jonah Z. Vilseck

Addressing Intersite Coupling Unlocks Large Combinatorial Chemical Spaces for Alchemical Free Energy Methods

Journal of Chemical Theory and Computation(2022)10.1021/acs.jctc.1c00948

N/A

0DataRank · unranked

15 citations

Jonah Z. Vilseck, Charles L. Brooks, Ryan L. Hayes

Exploring Unconventional SAM Analogues To Build Cell‐Potent Bisubstrate Inhibitors for Nicotinamide N‐Methyltransferase

Angewandte Chemie International Edition(2022)10.1002/anie.202114813

N/A

0DataRank · unranked

12 citations

Jonah Z. Vilseck, Ravi Yadav, Nicholas Noinaj, Rong Huang, Iredia D. Iyamu

Exploring Unconventional SAM Analogues To Build Cell‐Potent Bisubstrate Inhibitors for Nicotinamide N‐Methyltransferase

Angewandte Chemie(2022)10.1002/ange.202114813

N/A

0DataRank · unranked

0 citations

Jonah Z. Vilseck, Ravi Yadav, Nicholas Noinaj, Rong Huang, Iredia D. Iyamu