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Characterizing DNA recognition preferences of transcription factors using global couplings and high-throughput sequencing

Nucleic Acids Research(2025)10.1093/nar/gkaf592Source: DataRank Database

Characterizing DNA recognition preferences of transcription factors using global couplings and high-throughput sequencing is a research paper published in Nucleic Acids Research (2025). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Open Access1 citations

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Enrichment:Funding (8 grants)Impact (FWCI 0.49)OA: goldTopics (55)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Jose Alberto de la Paz ORCID,Alexander D. Stanowick ORCID,Xingcheng Lin ORCID,Faruck Morcos ORCID,Qin Zhou ORCID

Live enrichment

PubMed:40598892 PMC:PMC12214022 OpenAlex:https://openalex.org/W4411969759

National Institutes of Health

Grant: R35GM133631

National Science Foundation

Grant: MCB-1943442

National Institutes of Health

Grant: 5R35GM133631-05

Characterizing the Effects of Protein and RNA Variability in Molecular Function and Interactions

National Science Foundation

Grant: 1943442

CAREER: Developing Novel Models of Sequence Evolution for Protein Design and Molecular Recognition

North Carolina State University

North Carolina State Genetics and Genomics Academy and Comparative Medicine Institute

North Carolina State University

North Carolina State Genetics and Genomics Academy and Comparative Medicine Institute

FWCI

0.49

Citation Percentile

0.6%

Citation Trend

2025

goldLicense: cc-by-nc

journalhttps://academic.oup.com/nar/article-pdf/53/12/gkaf592/63639105/gkaf592.pdf

publisherhttps://academic.oup.com/nar/article-pdf/53/12/gkaf592/63639105/gkaf592.pdf

journalhttps://doi.org/10.1093/nar/gkaf592

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40598892

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/12214022

Fields of Study

Genomics and Chromatin DynamicsRNA and protein synthesis mechanismsRNA Research and SplicingMedicineBiologyComputer Science0206 medical engineering02 engineering and technologyTranscription FactorsHumansBinding SitesDNAHigh-Throughput Nucleotide SequencingChromatin Immunoprecipitation SequencingProtein BindingSELEX Aptamer TechniqueGenome, HumanSequence Analysis, DNA

MeSH Terms

Chromatin Immunoprecipitation SequencingBinding SitesDNAHumansProtein BindingTranscription FactorsGenome, HumanSequence Analysis, DNASELEX Aptamer TechniqueHigh-Throughput Nucleotide Sequencing

Keywords

BiologyComputational biologySystematic evolution of ligands by exponential enrichmentDNA sequencingTranscription factorGenomeDNA binding siteGeneticsPairwise comparisonDNABinding siteGeneComputer sciencePromoterArtificial intelligenceGene expressionRNABinding SitesGenome, HumanSELEX Aptamer TechniqueMethodsHumansHigh-Throughput Nucleotide SequencingChromatin Immunoprecipitation SequencingSequence Analysis, DNATranscription FactorsProtein Binding

Characterizing DNA recognition preferences of transcription factors using global couplings and high-throughput sequencing

FAIR Checklist

Authors (5)

Funding (8 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)