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The reproduction number and its probability distribution for stochastic viral dynamics

Journal of The Royal Society Interface(2024)10.1098/rsif.2023.0400Source: DataRank Database

The reproduction number and its probability distribution for stochastic viral dynamics is a research paper published in Journal of The Royal Society Interface (2024). On theSindex it has a DataRank of 0.464. It has been cited 13 times, with 9 citing works in its 1-hop citation network.

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0.464DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access13 citations · 9 citing works in its network

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doi

Data availability

Repositories this paper deposited data in (declared in PubMed).

figshare10.6084/m9.figshare.c.7007799

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (14 grants)Impact (FWCI 4.92)OA: hybridTopics (28)Linked Datasets (2)DataCite Reuse (2)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 85%Citation Network 15%

Base Score Contribution

0.396

From this paper's citation signal

Citation Network Contribution

0.0682

From 4 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 9 citers.

A stochastic hormesis Ricker model and its application to multiple fields
Chaos Solitons & Fractals20243 citations51 referencesContributes 0.027
Apollo: a comprehensive GPU-powered within-host simulator for viral evolution and infection dynamics across population, tissue, and cell
Nature Communications20253 citations67 referencesContributes 0.021
Mathematical modelling of the role of Langerhans cells in the dynamics of HPV infection
Scientific Reports20252 citations65 referencesContributes 0.017
Stochastic modelling of viral infection spread via a Partial Integro-Differential Equation
Infectious Disease Modelling20251 citations45 referencesContributes 0.015
Apollo: A comprehensive GPU-powered within-host simulator for viral evolution and infection dynamics across population, tissue, and cell
bioRxiv (Cold Spring Harbor Laboratory)20240 citations70 referencesContributes 0.000

Authors (8)

Jonathan Carruthers ORCID,Joseph J. Gillard ORCID,Grant Lythe ORCID,Alan S. Perelson ORCID,Ruy M. Ribeiro ORCID

Live enrichment

PubMed:38264928 PMC:PMC10806437 OpenAlex:https://openalex.org/W4391173916

Fogarty International Center

Grant: R01-AI078881

Fogarty International Center

Grant: R01-AI116868

Fogarty International Center

Grant: R01-AI167048

Fogarty International Center

Grant: R01-OD011095

Biotechnology and Biological Sciences Research Council

Grant: BB/W010755/1

20-EEID US-UK Modelling reassortment at the cellular, clinical, and phylogenetic level in emerging Bunyaviruses

Engineering and Physical Sciences Research Council

Grant: 2345914

Mathematical modelling of the host response to inhaled anthrax across different scales

NIAID NIH HHS

Grant: R01 AI078881

NIAID NIH HHS

Grant: R01 AI116868

NIAID NIH HHS

Grant: R01 AI167048

NIH HHS

Grant: R01 OD011095

National Institutes of Health

Grant: 5R01AI116868-05

Spatial Models of Intrahepatic Hepatitis C Virus Propagation in Humans

National Institutes of Health

Grant: 5R01OD011095-28

Modeling Viral and T Lymphocyte Dynamics

National Institutes of Health

Grant: 5R01AI167048-05

US-UK Collab: Modelling reassortment at the cellular, clinical, and phylogenetic level in emerging Bunyaviruses

National Institutes of Health

Grant: 1R01AI078881-01A2

Collaborative Integration of HCV Molecular Virology and Mathematical Modeling

FWCI

4.92

Citation Percentile

1.0%

Citation Trend

2024

2025

2026

hybridLicense: cc-by

journalhttps://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2023.0400

publisherhttps://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2023.0400

publisherhttps://royalsocietypublishing.org/doi/full-xml/10.1098/rsif.2023.0400

journalhttps://doi.org/10.1098/rsif.2023.0400

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38264928

Fields of Study

Evolution and Genetic DynamicsMathematical and Theoretical Epidemiology and Ecology ModelsCOVID-19 epidemiological studies0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

ProbabilityReproductionVirion

Keywords

BiologyPopulationExponential distributionBasic reproduction numberExpected valueReproductionProbability distributionMathematicsStatisticsGeneticsStochastic modelReproduction NumberErlang DistributionEclipse PhaseViral Burst SizeInfectious PhaseVirionLife Sciences–Mathematics interfaceProbability

Supplementary material from The reproduction number and its probability distribution for stochastic viral dynamics

10.6084/m9.figshare.24941472.v1The Royal Society

Supplementary material from The reproduction number and its probability distribution for stochastic viral dynamics

10.6084/m9.figshare.24941472The Royal Society