Alan S. Perelson

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 97 papers. Top paper: “In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness”.

In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2111477118

N/A

5.6DataRank · unranked

183 citations

Carolin Zitzmann, David D. Ho, Ruy M. Ribeiro, Alan S. Perelson, Ruian Ke

Safety, pharmacokinetics and antiviral activity of PGT121, a broadly neutralizing monoclonal antibody against HIV-1: a randomized, placebo-controlled, phase 1 clinical trial

Nature Medicine(2021)10.1038/s41591-021-01509-0

N/A

2.3DataRank · unranked

104 citations

Boris Jülg, Chen Sabrina Tan, Rebecca Zash, Stephen R. Walsh, Charlotte-Paige Rolle +35 more

Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection

Annals of Internal Medicine(2023)10.7326/m22-2381

N/A

2.0DataRank · unranked

63 citations

Manish C. Choudhary, Carlee Moser, Justin Ritz, Eric S. Daar, David A. Wohl +41 more

Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial

Nature Microbiology(2022)10.1038/s41564-022-01254-1

N/A

1.6DataRank · unranked

53 citations

Kara W Chew, Rinki Deo, James P. Flynn, James Regan, Charles R. Crain +51 more

Single hepatocytes show persistence and transcriptional inactivity of hepatitis B

JCI Insight(2020)10.1172/jci.insight.140584

N/A

1.5DataRank · unranked

34 citations

Tanner Grudda, Ruy M. Ribeiro, Yasmeen S. Saad, Hyon S. Hwang, Jeffrey Quinn +9 more

Antiretroviral therapy reveals triphasic decay of intact SIV genomes and persistence of ancestral variants

Cell Host & Microbe(2023)10.1016/j.chom.2023.01.016

N/A

0.962DataRank · unranked

29 citations

Fengting Wu, Francesco R. Simonetti, Carolin Zitzmann, Narmada Sambaturu, Carmen Molina-Parı́s +13 more

Safety and Efficacy of Combination SARS-CoV-2 Neutralizing Monoclonal Antibodies Amubarvimab Plus Romlusevimab in Nonhospitalized Patients With COVID-19

Annals of Internal Medicine(2023)10.7326/m22-3428

N/A

0.785DataRank · unranked

31 citations

Kara W Chew, Mark J Giganti, Carlee Moser, Mauricio Pinilla, David A. Wohl +76 more

Bamlanivimab reduces nasopharyngeal SARS-CoV-2 RNA levels but not symptom duration in non-hospitalized adults with COVID-19

medRxiv(2021)10.1101/2021.12.17.21268009

N/A

0.626DataRank · unranked

14 citations

Carlee Moser, Eric S. Daar, David A. Wohl, Jonathan Z. Li, Robert W. Coombs +18 more

One Week of Oral Camostat Versus Placebo in Nonhospitalized Adults With Mild-to-Moderate Coronavirus Disease 2019: A Randomized Controlled Phase 2 Trial

Clinical Infectious Diseases(2023)10.1093/cid/ciad342

N/A

0.622DataRank · unranked

19 citations

Kara W Chew, Mark J Giganti, Eric S. Daar, David A. Wohl, Arzhang Cyrus Javan +47 more

Safety and efficacy of inhaled interferon-β1a (SNG001) in adults with mild-to-moderate COVID-19: a randomized, controlled, phase II trial

EClinicalMedicine(2023)10.1016/j.eclinm.2023.102250

N/A

0.587DataRank · unranked

12 citations

Kara W Chew, Mark J Giganti, Michael D. Hughes, Carlee Moser, Mark Main +79 more

A Coupled Mathematical Model of the Intracellular Replication of Dengue Virus and the Host Cell Immune Response to Infection

Frontiers in Microbiology(2020)10.3389/fmicb.2020.00725

N/A

0.568DataRank · unranked

43 citations

Bianca Schmid, Alessia Ruggieri, Alan S. Perelson, Marco Binder, Ralf Bartenschlager +2 more

Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody

PLoS Pathogens(2024)10.1371/journal.ppat.1011680

N/A

0.541DataRank · unranked

17 citations

Carolin Zitzmann, Kara W Chew, Davey M. Smith, Eric S. Daar, David A. Wohl +11 more

Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19

JAMA Network Open(2023)10.1001/jamanetworkopen.2023.10039

N/A

0.490DataRank · unranked

11 citations

Kara W Chew, Carlee Moser, Judith S. Currier, Joseph J. Eron, Arzhang Cyrus Javan +47 more

The reproduction number and its probability distribution for stochastic viral dynamics

Journal of The Royal Society Interface(2024)10.1098/rsif.2023.0400

N/A

0.464DataRank · unranked

13 citations

Jonathan Carruthers, Joseph J. Gillard, Grant Lythe, Alan S. Perelson, Ruy M. Ribeiro +3 more

Variant-Specific Viral Kinetics in Acute COVID-19

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad314

N/A

0.395DataRank · unranked

5 citations

Manish C. Choudhary, Rinki Deo, Mark J Giganti, Carlee Moser, Justin Ritz +26 more

Biphasic decay of intact SHIV genomes following initiation of antiretroviral therapy complicates analysis of interventions targeting the reservoir

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2313209120

N/A

0.382DataRank · unranked

6 citations

Emily J. Fray, Alexandra M. Bender, Carolin Zitzmann, Ruy M. Ribeiro, Alan S. Perelson +4 more

Viral Dynamic Models During COVID‐19: Are We Ready for the Next Pandemic?

CPT Pharmacometrics & Systems Pharmacology(2025)10.1002/psp4.70055

N/A

0.241DataRank · unranked

4 citations

Joshua T. Schiffer, France Mentré, Alan S. Perelson, Jérémie Guedj, Aurélien Marc

A multiscale model of the action of a capsid assembly modulator for the treatment of chronic hepatitis B

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012322

N/A

0.215DataRank · unranked

3 citations

Tyler Cassidy, Ruy M. Ribeiro, Alan S. Perelson, Sarafa A. Iyaniwura

Safety and Efficacy of SAB-185 for Nonhospitalized Adults With COVID-19: A Randomized Clinical Trial

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae369

N/A

0.165DataRank · unranked

2 citations

Babafemi Taiwo, Carlee Moser, Eric S. Daar, David A. Wohl, Justin Ritz +46 more

Detection of significant antiviral drug effects on COVID-19 with reasonable sample sizes in randomized controlled trials: A modeling study

PLoS Medicine(2021)10.1371/journal.pmed.1003660

N/A

0DataRank · unranked

66 citations

Keisuke Ejima, Kwang Su Kim, Koji Noshita, Yasuhisa Fujita, Taiga Miyazaki +15 more

Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008752

N/A

0DataRank · unranked

60 citations

Florence Débarre, António Gonçalves, Olivier Tenaillon, Alan S. Perelson, Jérémie Guedj +2 more

CD8 Lymphocyte Depletion Enhances the Latency Reversal Activity of the SMAC Mimetic AZD5582 in ART-Suppressed Simian Immunodeficiency Virus-Infected Rhesus Macaques

Journal of Virology(2021)10.1128/jvi.01429-20

N/A

0DataRank · unranked

31 citations

Laura E. Liao, Alyssa D. Brooks, Ruian Ke, Cameron Mattingly, Nils Schoof +14 more

Suppression of hepatitis B virus through therapeutic activation of RIG-I and IRF3 signaling in hepatocytes

iScience(2021)10.1016/j.isci.2020.101969

N/A

0DataRank · unranked

32 citations

Ashish Goyal, Alan S. Perelson, Yuji Ishida, Takeshi Saito, Michael Gale +1 more

Modeling Within-Host Dynamics of SARS-CoV-2 Infection: A Case Study in Ferrets

Viruses(2021)10.3390/v13081635

N/A

0DataRank · unranked

31 citations

Angelica Bloomquist, Alan S. Perelson, Naveen K. Vaidya

Understanding Hepatitis B Virus Dynamics and the Antiviral Effect of Interferon Alpha Treatment in Humanized Chimeric Mice

Journal of Virology(2021)10.1128/jvi.00492-20

N/A

0DataRank · unranked

28 citations

Yuji Ishida, Masataka Tsuge, Karina Durso-Cain, Tje Lin Chung, Chise Tateno +5 more

A participant-derived xenograft model of HIV enables long-term evaluation of autologous immunotherapies

The Journal of Experimental Medicine(2021)10.1084/jem.20201908

N/A

0DataRank · unranked

24 citations

Christiaan H. van Dorp, Ali Danesh, Adam R. Ward, Thomas R. Dilling, Talia M. Mota +14 more

Viral Load Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2 in Hospitalized Individuals With Coronavirus Disease 2019

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab153

N/A

0DataRank · unranked

23 citations

James P. Flynn, Alexandra Rosenthal, Hannah Jordan, Yijia Li, Rida Chishti +95 more

Zika virus dynamics: Effects of inoculum dose, the innate immune response and viral interference

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008564

N/A

0DataRank · unranked

21 citations

Dan H. Barouch, Jérémie Guedj, Ruy M. Ribeiro, Alan S. Perelson, Katharine Best

Unified model of short- and long-term HIV viral rebound for clinical trial planning

Journal of The Royal Society Interface(2021)10.1098/rsif.2020.1015

N/A

0DataRank · unranked

16 citations

Paige Meily, Jonathan Z. Li, Alan S. Perelson, Jessica M. Conway

Modeling HIV-1 Within-Host Dynamics After Passive Infusion of the Broadly Neutralizing Antibody VRC01

Frontiers in Immunology(2021)10.3389/fimmu.2021.710012

N/A

0DataRank · unranked

15 citations

Alan S. Perelson, E. Fabián Cardozo-Ojeda

Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009031

N/A

0DataRank · unranked

9 citations

Youfang Cao, David P. Durham, Siddappa N. Byrareddy, Aftab A. Ansari, Nancy H. Ruddle +4 more

Immunological Correlates of the HIV-1 Replication-Competent Reservoir Size

Clinical Infectious Diseases(2021)10.1093/cid/ciab587

N/A

0DataRank · unranked

12 citations

Catherine Riou, Sarah Joseph, Nancie M. Archin, David M. Margolis, Alan S. Perelson +12 more

Modeling hepatitis C virus kinetics during liver transplantation reveals the role of the liver in virus clearance

eLife(2021)10.7554/elife.65297

N/A

0DataRank · unranked

6 citations

Miquel Navasa, Natasha Sansone, Gonzalo Crespo, Gitanjali Subramanya, Tje Lin Chung +8 more

Emergence of SARS-CoV-2 Resistance with Monoclonal Antibody Therapy

medRxiv(2021)10.1101/2021.09.03.21263105

N/A

0DataRank · unranked

21 citations

Kara W Chew, Rinki Deo, James P. Flynn, James Regan, Charles R. Crain +23 more

In vivo kinetics of SARS-CoV-2 infection and its relationship with a person’s infectiousness

medRxiv(2021)10.1101/2021.06.26.21259581

N/A

0DataRank · unranked

18 citations

Carolin Zitzmann, David D. Ho, Ruy M. Ribeiro, Alan S. Perelson, Ruian Ke

Modeling Amantadine Treatment of Inuenza A Virus In Vitro

Figshare(2021)10.32920/14638224.v1

N/A

0DataRank · unranked

4 citations

James J. McSharry, George L. Drusano, Jack Nguyen, Gregory T. Went, Ruy M. Ribeiro +2 more

A simple model of COVID-19 explains disease severity and the effect of treatments

medRxiv(2021)10.1101/2021.11.29.21267028

N/A

0DataRank · unranked

2 citations

Tyler Cassidy, P.-H. Chu, Alan S. Perelson, Ruy M. Ribeiro, Ruian Ke +1 more

Modeling Amantadine Treatment of Inuenza A Virus In Vitro

(2021)10.32920/14638224

N/A

0DataRank · unranked

2 citations

James J. McSharry, George L. Drusano, Jack Nguyen, Gregory T. Went, Ruy M. Ribeiro +2 more

Agent-based modeling of host-pathogen systems: The successes and challenges

Figshare(2021)10.32920/14641119.v1

N/A

0DataRank · unranked

0 citations

Catherine A. A. Beauchemin, Alan S. Perelson, Amy L. Bauer

Agent-based modeling of host-pathogen systems: The successes and challenges

(2021)10.32920/14641119

N/A

0DataRank · unranked

0 citations

Catherine A. A. Beauchemin, Alan S. Perelson, Amy L. Bauer

Complex decay dynamics of HIV virions, intact and defective proviruses, and 2LTR circles following initiation of antiretroviral therapy

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2120326119

N/A

0DataRank · unranked

98 citations

Francesco R. Simonetti, Subul Beg, Natalie F. McMyn, Weiwei Dai, Niklas Bachmann +9 more

Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19

Nature Communications(2022)10.1038/s41467-022-32551-2

N/A

0DataRank · unranked

49 citations

Carlee Moser, Eric S. Daar, David A. Wohl, Jonathan Z. Li, Robert W. Coombs +21 more

A simple model of COVID-19 explains disease severity and the effect of treatments

Scientific Reports(2022)10.1038/s41598-022-18244-2

N/A

0DataRank · unranked

26 citations

Tyler Cassidy, P.-H. Chu, Alan S. Perelson, Ruy M. Ribeiro, Ruian Ke +1 more

Disrupting autorepression circuitry generates “open-loop lethality” to yield escape-resistant antiviral agents

Cell(2022)10.1016/j.cell.2022.04.022

N/A

0DataRank · unranked

13 citations

Michael Pablo, Marie Wolf, Daniel Rosas-Rivera, Giuliana Calia, Arjun J. Kumar +8 more

Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010053

N/A

0DataRank · unranked

2 citations

Shoya Iwanami, Katrina B. Mar, Yusuke Kakizoe, Naoko Misawa, Shinji Nakaoka +6 more

Agent-based modeling of host–pathogen systems: The successes and challenges

(2022)10.32920/14641119.v2

N/A

0DataRank · unranked

11 citations

Catherine A. A. Beauchemin, Alan S. Perelson, Amy L. Bauer

Mathematical modeling of plus-strand RNA virus replication to identify broad-spectrum antiviral treatment strategies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.25.501353

N/A

0DataRank · unranked

0 citations

Christopher Dächert, Bianca Schmid, Hilde M. van der Schaar, Martijn J. van Hemert, Alan S. Perelson +5 more

CD8+ T-cells control infection by exerting both cytolytic and non-cytolytic effects in different phases of the SIV lifecycle

Research Square(2022)10.21203/rs.3.rs-1965543/v1

N/A

0DataRank · unranked

0 citations

E. Fabián Cardozo-Ojeda, Cuiling Xu, Dongzhu Ma, Tianyu He, Kevin D. Raehtz +7 more

The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy

Journal of Clinical Investigation(2023)10.1172/jci171554

N/A

0DataRank · unranked

134 citations

Joseph Varriale, Emily J. Fray, Carolin Zitzmann, H. H. B. Macleod, Jun Lai +21 more

AZD5582 plus SIV-specific antibodies reduce lymph node viral reservoirs in antiretroviral therapy-suppressed macaques

Nature Medicine(2023)10.1038/s41591-023-02570-7

N/A

0DataRank · unranked

47 citations

Sophia Sukkestad, Anna M. Horner, Margaret Neja, Zain Siddiqi, Chevaughn Waller +24 more

CD8+ T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production

Nature Communications(2023)10.1038/s41467-023-42435-8

N/A

0DataRank · unranked

23 citations

E. Fabián Cardozo-Ojeda, Cuiling Xu, Dongzhu Ma, Tianyu He, Kevin D. Raehtz +7 more

Making waves: Integrating wastewater surveillance with dynamic modeling to track and predict viral outbreaks

Water Research(2023)10.1016/j.watres.2023.120372

N/A

0DataRank · unranked

21 citations

Samantha Brozak, Bruce Pell, Jeremiah Oghuan, Anna Gitter, Tao Hu +7 more

Mathematical modeling of plus-strand RNA virus replication to identify broad-spectrum antiviral treatment strategies

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010423

N/A

0DataRank · unranked

13 citations

Christopher Dächert, Bianca Schmid, Hilde M. van der Schaar, Martijn J. van Hemert, Alan S. Perelson +5 more

Challenges in cybersecurity: Lessons from biological defense systems

Mathematical Biosciences(2023)10.1016/j.mbs.2023.109024

N/A

0DataRank · unranked

8 citations

Ann P. Kinzig, Stephanie Forrest, Andrea L. Graham, Simon A. Levin, Carl T. Bergstrom +17 more

Changes in serum-neutralizing antibody potency and breadth post-SARS-CoV-2 mRNA vaccine boost

iScience(2023)10.1016/j.isci.2023.106345

N/A

0DataRank · unranked

6 citations

Ruy M. Ribeiro, Maple Wang, Anthony Bowen, Lihong Liu, Yicheng Guo +8 more

An explanation for SARS-CoV-2 rebound after Paxlovid treatment

medRxiv(2023)10.1101/2023.05.30.23290747

N/A

0DataRank · unranked

37 citations

Ruy M. Ribeiro, Tin Phan, Alan S. Perelson

Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557679

N/A

0DataRank · unranked

5 citations

Carolin Zitzmann, Kara W Chew, Davey M. Smith, Eric S. Daar, David A. Wohl +11 more

Prolonged viral shedding from noninfectious individuals confounds wastewater-based epidemiology

medRxiv(2023)10.1101/2023.06.08.23291144

N/A

0DataRank · unranked

3 citations

Samantha Brozak, Bruce Pell, Stanca M. Ciupe, Ruian Ke, Ruy M. Ribeiro +6 more

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation for analyzing extracellular viral markers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.06.543822

N/A

0DataRank · unranked

2 citations

Kwang Su Kim, Masashi Iwamoto, Sanae Hayashi, Hyeongki Park, Takara Nishiyama +11 more

Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial

UNC Libraries(2023)10.17615/s90c-rs31

N/A

0DataRank · unranked

0 citations

Jonathan Z. Li, Paul Klekotka, James P. Flynn, Joseph J. Eron, Justin Ritz +23 more

The kinetics of SARS-CoV-2 infection based on a human challenge study

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2406303121

N/A

0DataRank · unranked

33 citations

Ruy M. Ribeiro, Carolin Zitzmann, Tin Phan, Ruian Ke, Alan S. Perelson +1 more

Induction of durable remission by dual immunotherapy in SHIV-infected ART-suppressed macaques

Science(2024)10.1126/science.adf7966

N/A

0DataRank · unranked

30 citations

Jina Lee, Christa E. Osuna, Pratik Vikhe, Dane Schalk, Elsa Chen +22 more

How robust are estimates of key parameters in standard viral dynamic models?

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011437

N/A

0DataRank · unranked

29 citations

Ruian Ke, Ruy M. Ribeiro, Alan S. Perelson, Carolin Zitzmann

Multiscale modeling of HBV infection integrating intra- and intercellular viral propagation to analyze extracellular viral markers

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011238

N/A

0DataRank · unranked

20 citations

Kwang Su Kim, Masashi Iwamoto, Sanae Hayashi, Hyeongki Park, Takara Nishiyama +11 more

Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion

PLoS Pathogens(2024)10.1371/journal.ppat.1012236

N/A

0DataRank · unranked

10 citations

Jessica M. Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu, Sarafa A. Iyaniwura +5 more

Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011518

N/A

0DataRank · unranked

6 citations

Kathryn E. Stephenson, Dan H. Barouch, Alan S. Perelson, Tyler Cassidy

Is the exquisite specificity of lymphocytes generated by thymic selection or due to evolution?

Frontiers in Immunology(2024)10.3389/fimmu.2024.1266349

N/A

0DataRank · unranked

1 citations

Can Keşmir, Alan S. Perelson, José A. M. Borghans, Rob J. de Boer

A multiscale model of the action of a capsid assembly modulator for the treatment of chronic hepatitis B

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.16.603658

N/A

0DataRank · unranked

2 citations

Tyler Cassidy, Ruy M. Ribeiro, Alan S. Perelson, Sarafa A. Iyaniwura

Modeling suggests SARS-CoV-2 rebound after nirmatrelvir-ritonavir treatment is driven by target cell preservation coupled with incomplete viral clearance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.13.613000

N/A

0DataRank · unranked

2 citations

Ruy M. Ribeiro, Gregory E. Edelstein, Julie Boucau, Rockib Uddin, Caitlin Marino +20 more

Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.03.592318

N/A

0DataRank · unranked

0 citations

Tin Phan, Jessica M. Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu +5 more

CD8 Lymphocyte Depletion Enhances the Latency Reversal Activity of the SMAC Mimetic AZD5582 in ART-Suppressed Simian Immunodeficiency Virus-Infected Rhesus Macaques

UNC Libraries(2024)10.17615/wmdx-2665

N/A

0DataRank · unranked

0 citations

Jeffrey D. Lifson, Guido Silvestri, Alyssa D. Brooks, Mirko Paiardini, Laura E. Liao +14 more

AZD5582 plus SIV-specific antibodies reduce lymph node viral reservoirs in antiretroviral therapy-suppressed macaques

UNC Libraries(2024)10.17615/peem-q524

N/A

0DataRank · unranked

0 citations

David S. Margolis, Vidisha Singh, Sherrie Jean, Margaret Neja, Guido Silvestri +24 more

Viral and Symptom Rebound Following Anti–Severe Acute Respiratory Syndrome Coronavirus 2 Monoclonal Antibody Therapy in a Randomized Placebo-Controlled Trial

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae501

N/A

0DataRank · unranked

0 citations

Brooke McGinley, Carlee Moser, Jonathan Z. Li, Teresa H. Evering, Justin Ritz +42 more

Modeling suggests SARS-CoV-2 rebound after nirmatrelvir-ritonavir treatment is driven by target cell preservation coupled with incomplete viral clearance

Journal of Virology(2025)10.1128/jvi.01623-24

N/A

0DataRank · unranked

18 citations

Ruy M. Ribeiro, Gregory E. Edelstein, Julie Boucau, Rockib Uddin, Caitlin Marino +20 more

Post-recovery viral shedding shapes wastewater-based epidemiological inferences

Communications Medicine(2025)10.1038/s43856-025-00908-5

N/A

0DataRank · unranked

7 citations

Samantha Brozak, Bruce Pell, Stanca M. Ciupe, Ruian Ke, Ruy M. Ribeiro +6 more

Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012615

N/A

0DataRank · unranked

2 citations

Masashi Iwamoto, Kosaku Kitagawa, Hyeongki Park, Sanae Hayashi, Senko Tsukuda +20 more

SIV proviruses seeded later in infection are harbored in short-lived CD4+ T cells

Cell Reports(2025)10.1016/j.celrep.2025.115663

N/A

0DataRank · unranked

3 citations

Emily J. Fray, Vivek Hariharan, Fengting Wu, Carolin Zitzmann, Francesco R. Simonetti +8 more

Fc-mediated effector function contributes to the in vivo antiviral effect of an HIV neutralizing antibody

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2008236117

N/A

0DataRank · unranked

88 citations

Joana Dias, Cuiping Liu, Anna A Maximova, Keenan Ernste, Amarendra Pegu +24 more

Dynamics of natural and pharmacologic control of an SIV variant with an envelope trafficking defect

The Journal of Experimental Medicine(2025)10.1084/jem.20251172

N/A

0DataRank · unranked

0 citations

Carolin Zitzmann, Meghana Ravi, Ciara Armstrong, Milica Moskovljevic, Hannah P. Moore +18 more

Quantifying the contribution of Fc-mediated effector functions to the antiviral activity of anti–HIV-1 IgG1 antibodies in vivo

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2008190117

N/A

0DataRank · unranked

73 citations

Mili R. Gajjar, Jian Yu, Neal N. Padte, Agegnehu Gettie, James Blanchard +6 more

Quantification of Ebola virus replication kinetics in vitro

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008375

N/A

0DataRank · unranked

19 citations

Jonathan Carruthers, Sophie J. Smither, CL4 Virology Team, Simon A. Weller, E. Diane Williamson +11 more

Mathematical modeling of hepatitis C RNA replication, exosome secretion and virus release

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008421

N/A

0DataRank · unranked

15 citations

Lars Kaderali, Alan S. Perelson, Carolin Zitzmann

Models of SIV rebound after treatment interruption that involve multiple reactivation events

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008241

N/A

0DataRank · unranked

9 citations

Jessica M. Conway, Dan H. Barouch, James B. Whitney, Alan S. Perelson, Christiaan H. van Dorp

HIV influences clustering and intracellular replication of hepatitis C virus

Journal of Viral Hepatitis(2020)10.1111/jvh.13429

N/A

0DataRank · unranked

9 citations

Alan S. Perelson, Abraham J. Kandathil, Jeffrey Quinn, Ashwin Balagopal, Ruy M. Ribeiro +1 more

A direct-acting antiviral drug abrogates viremia in Zika virus–infected rhesus macaques

Science Translational Medicine(2020)10.1126/scitranslmed.aau9135

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0DataRank · unranked

26 citations

Christa E. Osuna, Katharine Best, Ray Taylor, Elsa Chen, Gyeol Yoon +13 more

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men

UNC Libraries(2020)10.17615/b379-9591

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0DataRank · unranked

8 citations

George M. Shaw, Alan S. Perelson, Julie M. Decker, Bette Korber, Elena Giorgi +19 more

Continuous and discrete modeling of HIV-1 decline on therapy

Journal of Mathematical Biology(2020)10.1007/s00285-020-01492-z

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0DataRank · unranked

7 citations

Gülşah Yeni, Alan S. Perelson, Elvan Akın

Dominance of the CD4 + T helper cell response during acute resolving hepatitis A virus infection

UNC Libraries(2020)10.17615/gxn6-2e85

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0DataRank · unranked

1 citations

Jérémie Guedj, Christopher M. Walker, Dan Xu, Alan S. Perelson, Stanley M. Lemon +6 more

Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

UNC Libraries(2020)10.17615/6vcj-0s21

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0DataRank · unranked

1 citations

Guido Ferrari, Andrew J. McMichael, George M. Shaw, Rachel Tanner, Adam Ritchie +27 more

Understanding hepatitis B virus dynamics and the antiviral effect of interferon-α treatment in humanized chimeric mice

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.28.224840

N/A

0DataRank · unranked

2 citations

Yuji Ishida, Masataka Tsuge, Karina Durso-Cain, Tje Lin Chung, Chise Tateno +5 more

Models of SIV rebound after treatment interruption that involve multiple reactivation events

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.28.221226

N/A

0DataRank · unranked

1 citations

Jessica M. Conway, James B. Whitney, Dan H. Barouch, Alan S. Perelson, Christiaan H. van Dorp

Preexisting compensatory amino acids compromise fitness costs of a HIV-1 T cell escape mutation

UNC Libraries(2020)10.17615/h8zr-mm33

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0DataRank · unranked

0 citations

Nilu Goonetilleke, Donglai Liu, Hongshuo Song, Xianghui Yu, Feng Gao +7 more

NS5A inhibitors unmask differences in functional replicase complex half-life between different hepatitis C virus strains

UNC Libraries(2020)10.17615/ek6n-ys15

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0DataRank · unranked

0 citations

Stanley M. Lemon, Daisuke Yamane, Tiffany Benzine, Ryan Brandt, Raffaele De Francesco +5 more

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

UNC Libraries(2020)10.17615/gak8-9b11

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0DataRank · unranked

0 citations

Maria G. Salazar, Susan Allen, Hui Li, Katharine J. Bar, Myron S. Cohen +26 more

Modeling viral and drug kinetics: Hepatitis C virus treatment with pegylated interferon alfa-2b

Carolina Digital Repository (University of North Carolina at Chapel Hill)(2020)10.17615/wcsr-3j80

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0DataRank · unranked

0 citations

Kimberly A. Powers, Preeti Golia, Narendra M. Dixit, Alan S. Perelson, Andrew H. Talal +1 more

Innate Immune Tolerance and the Role of Kupffer Cells in Differential Responses to Interferon Therapy Among Patients With HCV Genotype 1 Infection

UNC Libraries(2020)10.17615/hhwv-mw72

N/A

0DataRank · unranked

0 citations

Alan S. Perelson, Mala Sinha, Yuhong Zhang, Michael Gale, Nanette Crochet +8 more

Mechanistic Modeling of SARS‐CoV‐2 and Other Infectious Diseases and the Effects of Therapeutics

Clinical Pharmacology & Therapeutics(2021)10.1002/cpt.2160

N/A

0DataRank · unranked

109 citations

Ruian Ke, Alan S. Perelson