Paolo Manghi

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.7Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468

Top 2%

7.1DataRank

Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Papers

Driven by 28 papers — median percentile 93. Top paper: “Accessible, curated metagenomic data through ExperimentHub”.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468

Top 2%

7.1DataRank

Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Indice penale(2023)10.1038/s41587-023-01688-w

Top 4%

5.0DataRank

Top 4%1390 citations

Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo +21 more

Accessible, curated metagenomic data through ExperimentHub

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/103085

Top 10%

2.0DataRank

Top 10%65 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

Nature Medicine(2019)10.1038/s41591-019-0406-6

N/A

1.1DataRank · unranked

1351 citations

Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese +32 more

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Nature Medicine(2019)10.1038/s41591-019-0405-7

N/A

1.0DataRank · unranked

1030 citations

Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo +36 more

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Nature Communications(2020)10.1038/s41467-020-16366-7

N/A

1.0DataRank · unranked

917 citations

Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi +13 more

Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

Nature Medicine(2022)10.1038/s41591-022-01695-5

N/A

0.914DataRank · unranked

443 citations

Andrew Maltez Thomas, Laura A. Bolte, Johannes R. Björk, Laura Kist de Ruijter, Federica Armanini +35 more

A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche

Nature(2024)10.1038/s41586-024-07182-w

N/A

0.904DataRank · unranked

413 citations

Samuel S. Minot, Heather Bouzek, Hanrui Wu, Aitor Blanco‐Míguez, Paolo Manghi +17 more

Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders

Nature Communications(2024)10.1038/s41467-024-53934-7

N/A

0.787DataRank · unranked

33 citations

Michele Filosi, Moreno Zolfo, Lucas G. Casten, Albert García-Valiente, Stefania Mattevi +18 more

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

Genome biology(2021)10.1186/s13059-021-02427-7

N/A

0.762DataRank · unranked

160 citations

Eleonora Nigro, Michal Punčochář, Aitor Blanco‐Míguez, Matteo Ciciani, Paolo Manghi +12 more

Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma

Nature Medicine(2024)10.1038/s41591-024-02803-3

N/A

0.736DataRank · unranked

134 citations

Laura A. Bolte, Andrew Maltez Thomas, Karla A. Lee, Niccolò Rossi, Thijs T. Wind +35 more

Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts

Nature Microbiology(2024)10.1038/s41564-024-01858-9

N/A

0.648DataRank · unranked

74 citations

Amrisha Bhosle, Kai Wang, Roberta Marconi, Marta Selma‐Royo, Liviana Ricci +26 more

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

Cell Reports(2023)10.1016/j.celrep.2023.112464

N/A

0.581DataRank · unranked

47 citations

Aitor Blanco‐Míguez, Serena Manara, Amir Nabinejad, Fabio Cumbo, Francesco Beghini +19 more

Neuroblastoma is associated with alterations in gut microbiome composition subsequent to maternal microbial seeding

EBioMedicine(2023)10.1016/j.ebiom.2023.104917

N/A

0.521DataRank · unranked

13 citations

Paolo Manghi, Fabio Cumbo, Giulia Masetti, Federica Armanini, Francesco Asnicar +9 more

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Nature Communications(2025)10.1038/s41467-025-66888-1

Top 41%

0.461DataRank

Top 41%17 citations

Giacomo Antonello, Lucas Schiffer, Davide Golzato, Andres Wokaty, Francesco Beghini +32 more

Microbial composition associated with biliary stents in patients undergoing pancreatic resection for cancer

npj Biofilms and Microbiomes(2024)10.1038/s41522-024-00506-8

N/A

0.425DataRank · unranked

16 citations

Sara Carloni, Cindy Cardenas, Carola Conca Dioguardi, Luca Lambroia, Giovanni Capretti +21 more

Gut microbiota: a new factor modulating the immunizing potential of viral and cancer vaccines

Research Square(2025)10.21203/rs.3.rs-4294379/v1

N/A

0.104DataRank · unranked

1 citations

Agathe Carrier, Paolo Manghi, Carolina Alves Costa Silva, Imran Lahmar, Roxanne Birebent +43 more

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

Cell Host & Microbe(2023)10.1016/j.chom.2023.09.013

N/A

0DataRank · unranked

70 citations

Eric J. C. Gálvez, Edoardo Pasolli, Francesca De Filippis, Lena Amend, Kun D. Huang +20 more

The person-to-person transmission landscape of the gut and oral microbiomes

Nature(2023)10.1038/s41586-022-05620-1

N/A

0DataRank · unranked

452 citations

Aitor Blanco‐Míguez, Paolo Manghi, Francesco Asnicar, Léonard Dubois, Davide Golzato +38 more

Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome

Cell(2024)10.1016/j.cell.2024.07.039

N/A

0DataRank · unranked

128 citations

Aitor Blanco‐Míguez, Michal Punčochář, Claudia Mengoni, Federica Pinto, Alessia Tatti +85 more

Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries

Cell(2024)10.1016/j.cell.2024.06.018

N/A

0DataRank · unranked

86 citations

Long H. Nguyen, Paolo Manghi, Hanseul Kim, Edoardo Pasolli, Sergio Andreu‐Sánchez +31 more

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

Nature Medicine(2022)10.1038/s41591-022-01964-3

N/A

0DataRank · unranked

354 citations

Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar +18 more

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

Current Biology(2021)10.1016/j.cub.2021.09.031

N/A

0DataRank · unranked

56 citations

Mohamed S. Sarhan, Kun D. Huang, Adrian Tett, Alexander Schoenafinger, Stefania Zingale +16 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

eLife(2021)10.7554/elife.65088

N/A

0DataRank · unranked

2321 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +12 more

Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.19.580813

N/A

0DataRank · unranked

25 citations

Andrea Silverj, Aitor Blanco‐Míguez, Paolo Manghi, Omar Rota‐Stabelli, Vitor Heidrich +14 more

Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals

Nature Microbiology(2025)10.1038/s41564-024-01870-z

N/A

0DataRank · unranked

119 citations

Paolo Manghi, Niccolò Carlino, Vitor Heidrich, Gianmarco Piccinno, Liviana Ricci +14 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.388223

N/A

0DataRank · unranked

145 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +11 more

Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

Genome biology(2020)10.1186/s13059-020-02042-y

N/A

0DataRank · unranked

128 citations

Edoardo Pasolli, Francesco Asnicar, Kun D. Huang, Adrian Tett, Serena Manara +17 more

Paolo Manghi

Indexed papers

Top data-sharing exemplar

Papers