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An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.09.451830Source: DataRank Database

An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function is a dataset published in bioRxiv (Cold Spring Harbor Laboratory) (2021). On theSindex it has a DataRank of 0.342, placing it in the top 51.1% of the data-sharing corpus. It has been cited 4 times, with 4 citing works in its 1-hop citation network.

Top 51%percentile

0.342DataRank

Ranks in the top 51% for downstream scientific impact

Data paper Open Access4 citations · 4 citing works in its network

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (9 grants)OA: greenTopics (19)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 71%Citation Network 29%

Base Score Contribution

0.241

From this paper's citation signal

Citation Network Contribution

0.101

From 4 citing papers with measurable signal

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Top 4 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 4 citers.

OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
PLoS Biology202236 citations86 referencesContributes 0.042
ERCnet: Phylogenomic Prediction of Interaction Networks in the Presence of Gene Duplication
Molecular Biology and Evolution20257 citations52 referencesContributes 0.040
Phylogenomic prediction of interaction networks in the presence of gene duplication
bioRxiv (Cold Spring Harbor Laboratory)20243 citations50 referencesContributes 0.028
OrthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
bioRxiv (Cold Spring Harbor Laboratory)20211 citations76 referencesContributes 0.009

Authors (8)

Megan Phillips ORCID,Feng Yang ORCID,Swapneeta S. Date ORCID,Todd R. Graham ORCID,Judith Berman ORCID

Live enrichment

PubMed:19162232 OpenAlex:https://openalex.org/W3178780627

European Commission

Grant: 951475

Unraveling the complexity of fungal drug tolerance at multiple scales of biology

National Institutes of Health

Grant: 5R01AI153356-04

Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relatives

National Science Foundation

Grant: 2110404

Collaborative Research: RoL: The Evolution of the Genotype-Phenotype Map across Budding Yeasts

National Science Foundation

Grant: 1442148

DIMENSIONS: Collaborative Research: The Making of Biodiversity Across the Yeast Subphylum

National Institutes of Health

Grant: 1F32GM013039-01

MOLECULAR ANALYSIS OF THE YEAST HEAT SHOCK TRANSCRIPTION

National Institutes of Health

Grant: 1R56AI146096-01A1

Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relatives

National Science Foundation

Grant: 1442113

DIMENSIONS: Collaborative Research: The Making of Biodiversity Across the Yeast Subphylum

National Science Foundation

Grant: 2110403

Collaborative Research: RoL: The Evolution of the Genotype-Phenotype Map across Budding Yeasts

National Institutes of Health

Grant: 5R01GM118452-02

Mechanisms of protein transport between Golgi and endosomes

greenLicense: cc-by-nc

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2021/10/27/2021.07.09.451830.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2021.07.09.451830

repositoryhttps://doi.org/10.1101/2021.07.09.451830

https://doi.org/10.1126/sciadv.abn0105

Fields of Study

Bioinformatics and Genomic NetworksEvolution and Genetic DynamicsFungal and yeast genetics research0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

CoevolutionGeneGenomeModel organismGenetic FitnessGene regulatory networkFunction (biology)Orthologous GeneSaccharomyces cerevisiae ProteinsGene Regulatory NetworksBiomedicine and Life SciencesGenomicsSaccharomyces cerevisiae