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Sketching and sampling approaches for fast and accurate long read classification

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.04.467374Source: DataRank Database

Sketching and sampling approaches for fast and accurate long read classification is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2021). On theSindex it has a DataRank of 0.

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (3 grants)OA: greenTopics (34)IDs (PubMed, OpenAlex)SDGs (1)

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Authors (2)

Michael C. Schatz ORCID,Arun Das ORCID

Live enrichment

PubMed:36316646 OpenAlex:https://openalex.org/W3211570503

National Science Foundation

Grant: 1758800

RESEARCH-PGR: Living Fossils: Applying advances in single molecule sequencing to decode large and complex genomes of ancient plant lineages

National Institutes of Health

Grant: 5U01CA253481-03

Integrative genomic and epigenomic analysis of cancer using long read sequencing

National Science Foundation

Grant: 1732253

Research PGR: Structural variant landscapes in tomato genomes and their role in natural variation, domestication and crop improvement

greenLicense: cc-by

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2022/07/01/2021.11.04.467374.full.pdf

repositoryhttps://doi.org/10.1101/2021.11.04.467374

repositoryhttps://repository.cshl.edu/id/eprint/40456/1/2021.Das.long_read_classification.pdf

https://doi.org/10.1186/s12859-022-05014-0

Fields of Study

Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyGut microbiota and health0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

Keywords

Computer scienceSampling (signal processing)Task (project management)Data miningSample (material)Identification (biology)Representation (politics)Information retrievalMetagenomicsSimilarity (geometry)Artificial intelligenceMachine learningFilter (signal processing)SketchingQH301-705.5ResearchComputer applications to medicine. Medical informaticsR858-859.7High-Throughput Nucleotide SequencingSequence Analysis, DNAClassificationMinHashMetagenomeBiology (General)SamplingSoftwareAlgorithms

Sustainable Development Goals

SDG 0: Quality Education