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HQAlign: Aligning nanopore reads for SV detection using current-level modeling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.08.523172Source: DataRank Database

HQAlign: Aligning nanopore reads for SV detection using current-level modeling is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0. It has been cited 11 times.

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Open Access11 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (8 grants)OA: greenTopics (33)IDs (PubMed, OpenAlex)

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Authors (4)

Suhas Diggavi ORCID,Mark J. P. Chaisson ORCID,Sreeram Kannan ORCID,Dhaivat Joshi ORCID

Live enrichment

PubMed:36712127 OpenAlex:https://openalex.org/W4313892659

National Science Foundation

Grant: 2007714

CIF: Small: Compression for Learning over networks

National Science Foundation

Grant: 2146838

RINGS: Ensuring Reliability in mmWave Networks

National Science Foundation

Grant: 1703403

CIF:Medium:Collaborative Research:An Information-theoretic approach to nanopore sequencing

National Science Foundation

Grant: 1705077

CIF:Medium:Collaborative Research:An Information-theoretic approach to nanopore sequencing

National Institutes of Health

Grant: 5R01HG011649-04

Detection and genotyping complex human genetic variation using single-molecule sequencing

National Institutes of Health

Grant: 5R01HG008164-03

Algorithms and Software for Provably Accurate De Novo RNA-Seq Assembly

NHGRI NIH HHS

Grant: R01 HG008164

NHGRI NIH HHS

Grant: R01 HG011649

greenLicense: cc-by

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/01/09/2023.01.08.523172.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.01.08.523172

repositoryhttps://doi.org/10.1101/2023.01.08.523172

repositoryhttps://pubmed.ncbi.nlm.nih.gov/36712127

Fields of Study

Genomics and Phylogenetic StudiesNanopore and Nanochannel Transport StudiesGenomics and Rare Diseases0206 medical engineering02 engineering and technology

Keywords

Nanopore sequencingNanoporePipeline (software)Computer scienceComputational biologyDNA sequencingGenomeData miningAlgorithmArtificial intelligenceBiologyDNAGeneticsNanotechnologyGeneProgramming languageGenomics (q-bio.GN)FOS: Computer and information sciencesGenome, HumanOther Computer Science (cs.OH)High-Throughput Nucleotide SequencingSequence Analysis, DNAArticleNanoporesComputer Science - Other Computer ScienceFOS: Biological sciencesHumansQuantitative Biology - Genomics