Mark J. P. Chaisson

Also affiliated with University of Southern California, California Southern University, Biologie Computationnelle, Quantitative et Synthétique

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

53.9Author DataRank

Indexed papers

17in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 17 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 50 papers — median percentile 77. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

A robust benchmark for detection of germline large deletions and insertions

Nature Biotechnology(2020)10.1038/s41587-020-0538-8

N/A

10.3DataRank · unranked

486 citations

Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao +45 more

A map of human genome variation from population-scale sequencing

Nature(2010)10.1038/nature09534

Top 2%

9.1DataRank

Top 2%8109 citations

Min Hu, Yuan Chen, Matthew N. Bainbridge, Richard M. Durbin, Si Quang Le +319 more

An integrated map of structural variation in 2,504 human genomes

Nature(2015)10.1038/nature15394

Top 2%

9.1DataRank

Top 2%2686 citations

Tobias Rausch, Marianne K. DeGorter, Robert E. Handsaker, Alexej Abyzov, Joanna M. M. Howson +75 more

Towards complete and error-free genome assemblies of all vertebrate species

Nature(2021)10.1038/s41586-021-03451-0

Top 3%

6.0DataRank

Top 3%3155 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

Chromosome-scale, haplotype-resolved assembly of human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0711-0

N/A

5.3DataRank · unranked

207 citations

Arkarachai Fungtammasan, Mark J. P. Chaisson, Mike Chou, Anthony Schmitt, Xiang Zhou +18 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Nature Biotechnology(2024)10.1038/s41587-023-02100-3

N/A

1.2DataRank · unranked

69 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +36 more

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology(2019)10.1038/s41587-019-0217-9

N/A

1.1DataRank · unranked

1912 citations

Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard J. Hall, Gregory T. Concepcion +24 more

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6

Top 19%

1.1DataRank

Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads

Nature Biotechnology(2020)10.1038/s41587-020-0719-5

N/A

0.815DataRank · unranked

228 citations

Peter Ebert, Peter A. Audano, Mitchell R. Vollger, William T. Harvey, Pierre Marijon +16 more

Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

Nature Methods(2023)10.1038/s41592-023-01993-x

N/A

0.747DataRank · unranked

144 citations

Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach +25 more

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721

Top 27%

0.741DataRank

Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.03.014

N/A

0.739DataRank · unranked

137 citations

Ryan L. Collins, Wan‐Ping Lee, Alexandra M. Weber, Yukyung Jun, Qihui Zhu +18 more

Structural variation across 138,134 samples in the TOPMed consortium

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.25.525428

Top 27%

0.737DataRank

Top 27%18 citations

Adam C. English, Ginger Metcalf, Jianzhi Yang, Mark J. P. Chaisson, Nathan Pankratz +82 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography

Molecular Biology and Evolution(2024)10.1093/molbev/msae036

Top 31%

0.644DataRank

Top 31%22 citations

Phillip A. Morin, Susanne Meyer, Li‐Fang Chu, Jeff K. Jacobsen, Jessica Antosiewicz‐Bourget +31 more

Analysis and benchmarking of small and large genomic variants across tandem repeats

Nature Biotechnology(2024)10.1038/s41587-024-02225-z

N/A

0.633DataRank · unranked

67 citations

Egor Dolzhenko, Helyaneh Ziaei Jam, Sean K. McKenzie, Nathan D. Olson, Wouter De Coster +9 more

The motif composition of variable number tandem repeats impacts gene expression

Genome Research(2023)10.1101/gr.276768.122

N/A

0.617DataRank · unranked

60 citations

Paulina N. Smaruj, Geoffrey Fudenberg, Nicholas Mancuso, Mark J. P. Chaisson, Tsung-Yu Lu

vamos: variable-number tandem repeats annotation using efficient motif sets

Genome biology(2023)10.1186/s13059-023-03010-y

N/A

0.578DataRank · unranked

46 citations

Bida Gu, Mark J. P. Chaisson, Jingwen Ren

Defining a tandem repeat catalog and variation clusters for genome-wide analyses

10.1101/2024.10.04.615514

N/A

0.550DataRank · unranked

15 citations

Egor Dolzhenko, Mark F. Bennett, Matt C. Danzi, Isaac R. L. Xu, Hope Tanudisastro +18 more

Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.12.523790

N/A

0.520DataRank · unranked

31 citations

Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach +25 more

A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

BMC Biology(2022)10.1186/s12915-022-01427-8

N/A

0.489DataRank · unranked

25 citations

Chentao Yang, Giulio Formenti, Kalpana Raja, Lili Yan, Alan Tracey +24 more

Benchmarking of small and large variants across tandem repeats

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.564632

N/A

0.434DataRank · unranked

17 citations

Egor Dolzhenko, Helyaneh Ziaei Jam, Sean K. McKenzie, Nathan D. Olson, Wouter De Coster +9 more

Impact and characterization of serial structural variations across humans and great apes

Nature Communications(2024)10.1038/s41467-024-52027-9

N/A

0.385DataRank · unranked

12 citations

Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine +49 more

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546576

N/A

0.373DataRank · unranked

11 citations

Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo Alba, Björn Grüning, Byung June Ko +32 more

A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.15.540856

Top 49%

0.360DataRank

Top 49%5 citations

Marc Jan Bonder, Sabriya A. Syed, HGSVC Functional Analysis Working Group, Michael C. Zody, Mark J. P. Chaisson +7 more

Structural variation across 138,134 samples in the TOPMed consortium

Research Square(2023)10.21203/rs.3.rs-2515453/v1

N/A

0.345DataRank · unranked

9 citations

Adam C. English, Ginger Metcalf, Jianzhi Yang, Mark J. P. Chaisson, Nathan Pankratz +82 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Expectations and blind spots for structural variation detection from short-read alignment and long-read assembly

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.168831

N/A

0.292DataRank · unranked

6 citations

Ryan L. Collins, Wan-Ping Lee, Alexandra M. Weber, Yukyung Jun, Qihui Zhu +18 more

HQAlign: aligning nanopore reads for SV detection using current-level modeling

Bioinformatics(2023)10.1093/bioinformatics/btad580

N/A

0.241DataRank · unranked

4 citations

Suhas Diggavi, Mark J. P. Chaisson, Sreeram Kannan, Dhaivat Joshi

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates

F1000Research(2021)10.12688/f1000research.51477.1

N/A

0.208DataRank · unranked

3 citations

Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat +57 more

Identification of GGC Repeat Expansions in ZFHX3 among Chilean Movement Disorder Patients

Movement Disorders(2025)10.1002/mds.30242

N/A

0.208DataRank · unranked

3 citations

Abraham Moller, Kensuke Daida, Pilar Álvarez Jerez, Zhongbo Chen, Zachary B. Anderson +18 more

Chromosome level genome assembly of the Etruscan shrew Suncus etruscus

Scientific Data(2024)10.1038/s41597-024-03011-x

Top 70%

0.165DataRank

Top 70%2 citations

Susanne Meyer, Li‐Fang Chu, Linelle Abueg, Jessica Antosiewicz‐Bourget, Jennifer Balacco +21 more

Long-read sequencing identifies FGF14 repeat expansions in Parkinson’s disease

medRxiv(2025)10.1101/2025.08.14.25333596

N/A

0.165DataRank · unranked

2 citations

Kensuke Daida, Lara M. Lange, Abraham Moller, Abigail Miano‐Burkhardt, Laksh Malik +22 more

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Genome Research(2024)10.1101/gr.279419.124

N/A

0.165DataRank · unranked

2 citations

Marc Jan Bonder, Sabriya A. Syed, Matthew Jensen, HGSVC Functional Analysis Working Group, Mark Gerstein +9 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0.104DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

Long-read sequencing identifies FGF14 repeat expansions in Parkinson’s disease

Brain(2025)10.1093/brain/awaf456

N/A

0.104DataRank · unranked

1 citations

Kensuke Daida, Lara M. Lange, Abraham Moller, Abigail Miano‐Burkhardt, Laksh Malik +22 more

A high-quality blue whale genome, segmental duplications, and historical demography

Research Square(2022)10.21203/rs.3.rs-1910240/v1

N/A

0DataRank · unranked

7 citations

Phillip A. Morin, Susanne Meyer, Li‐Fang Chu, Jeff K. Jacobsen, Jessica Antosiewicz‐Bourget +31 more

Advances in the discovery and analyses of human tandem repeats

Emerging Topics in Life Sciences(2023)10.1042/etls20230074

N/A

0DataRank · unranked

28 citations

Arvis Sulovari, Paul N. Valdmanis, Danny E. Miller, Evan E. Eichler, Mark J. P. Chaisson

Squidle+: a collaborative platform to manage, discover and annotate marine imagery

Frontiers in Marine Science(2026)10.3389/fmars.2025.1677103

N/A

0DataRank · unranked

0 citations

Jacquomo Monk, Oscar Pizarro, Dhugal Lindsay, Elizabeth Oh, Blair Thornton +6 more

HQAlign: Aligning nanopore reads for SV detection using current-level modeling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.08.523172

N/A

0DataRank · unranked

11 citations

Suhas Diggavi, Mark J. P. Chaisson, Sreeram Kannan, Dhaivat Joshi

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates

F1000Research(2021)10.12688/f1000research.51477.2

N/A

0DataRank · unranked

2 citations

Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat +57 more

vamos: VNTR annotation using efficient motif sets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.07.511371

N/A

0DataRank · unranked

5 citations

Bida Gu, Mark J. P. Chaisson, Jingwen Ren

Mark J. P. Chaisson

Indexed papers

Top data-sharing exemplar

Papers